DreINT0150662 @ danRer10
Intron Retention
Gene
ENSDARG00000012903 | slc34a2a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2a [Source:ZFIN;Acc:ZDB-GENE-000524-1]
Coordinates
chr1:13748857-13749387:+
Coord C1 exon
chr1:13748857-13748985
Coord A exon
chr1:13748986-13749243
Coord C2 exon
chr1:13749244-13749387
Length
258 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAC
5' ss Score
6.64
3' ss Seq
GTGTTTTTTTTTTTTTTCAGGAA
3' ss Score
12.89
Exon sequences
Seq C1 exon
ATCTGGACACTAAAAAGAAGGTCCTGAGAGTTTTTACTACAGCAGCAAAACTGATCATGCTGCTTGGTTTGCTCTACATGTTTGTTTGCTCTCTGGACGTCCTAAGCTCAGCTTTCCAGCTTGTTGGAG
Seq A exon
GTATACATTAAAATTACAAATACACAAGAATATAGTTACCAAGATTTTTAGGTTGAGTAAAACATGCTCTTCACTACAAGACTCATACTGGTGATATCTTTTAGAGTACATTATCAATACATGTTTTTGTGGTTCTTCAAATTAGTGTACAAAATTTACAAATATGTTGTAATCATGTATTTTTATAATTGTTAAAGATTTGCTGTACACACTTTCCTGGATTATGCCTTAAAATTGGGTGTTTTTTTTTTTTTTCAG
Seq C2 exon
GAAAAGCAGCAGGGGACATTTTCCAGGAAAATAAGGTGCTCTCAAATCCTTTGGCAGGCCTGGTAATCGGGATGCTGGTCACTCTGCTAGTCCAGAGCTCCAGCACATCCTCATCTATTGTGGTCAGCATGGTCTCTTCTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012903:ENSDART00000024328:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PU(11.9=38.6)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(33.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACACTAAAAAGAAGGTCCTGA
R:
CCAGAAGAGACCATGCTGACC
Band lengths:
268-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]