DreINT0150667 @ danRer10
Intron Retention
Gene
ENSDARG00000012903 | slc34a2a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2a [Source:ZFIN;Acc:ZDB-GENE-000524-1]
Coordinates
chr1:13752268-13752639:+
Coord C1 exon
chr1:13752268-13752352
Coord A exon
chr1:13752353-13752471
Coord C2 exon
chr1:13752472-13752639
Length
119 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GTTATTCTCTATTCACACAGGCA
3' ss Score
6.36
Exon sequences
Seq C1 exon
ACTCTCCAGAATGTGACCACAACAAACTGCACTGATCTTTGTTGGGAATTGAAGAATGTTACAGAAATTATAAATATTAAAAAAT
Seq A exon
GTGAGTTTAAAAATGACTTCTCTACCGATGATATTAACACTGATAATCGTCTAAATGTAAAATGAGTACAGTGCTCAAACAAGACACTCACTCTTTTACGTTATTCTCTATTCACACAG
Seq C2 exon
GCAGTCACATTTTCGTGAACACGAGCCTTTCGGACCTGGCGGTGGGTCTGATTCTGCTGGCGGGTTCTCTGCTCATTCTGTGCACTTGCCTCATTTGTATTGTGAAGCTGCTGAATTCGATGCTCAAGGGACAGGTTGCTGTTGTGATCAAGAAGATAGTGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012903:ENSDART00000024328:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(13.9=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCCAGAATGTGACCACA
R:
ATCTTCTTGATCACAACAGCAACCT
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]