DreINT0151594 @ danRer10
Intron Retention
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42800475-42802775:-
Coord C1 exon
chr16:42802524-42802775
Coord A exon
chr16:42800544-42802523
Coord C2 exon
chr16:42800475-42800543
Length
1980 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTTTCTAACATCTCTATAGTTT
3' ss Score
6.91
Exon sequences
Seq C1 exon
AAAGGCTGCGGGTATCACCTTGATCTTTTGGTGGTGGCTGTGATGCTCGGCGTGTGCTCCATCATGGGTTTGCCCTGGTTTGTCGCTGCCACAGTCCTCTCCATCTCTCATGTCAACAGTCTGAAGGTGGAGTCGGAGTGTTCGGCTCCAGGAGAACAGCCCAAGTTCCTTGGCATCCGTGAGCAGAGGGTCACCGGCCTCATGATCTTTGTGCTTATGGGACTTTCTGTTTTTATGACATCGATACTCAAG
Seq A exon
GTATGGCTCAGTTTGTGTAGTCAAAGCCTCTTTCACACATACAGGCTTTTCTAGGGGTGAACAGGCCCTTTTTTGAAAATATGAATAAATTTGTTCTGGCAATTTTCCGGAAAGAGTTGTAATATTACCGGTAATTTCCCAGACTGCTGCTCTGTGTTAACGCAGAAAGAAAATTGCCGGAAAGAGCGCATTCACCCCAGCCAATCAGAACATTCAGACGCATTCACATTCGTGCCGTTTCTGAAAATGAAAGCCTTTGAATACTTTTCCAGACACATTTAGCTGCTAGTTGTTAGTCAGATAAGGTTTCTATGTTCATTATTAATGCCAACTGTGCAAAAACAATATTGTTAAAATGCTTATGATAAACCTCTGTGAGTTTAACTGCAAGCCCTGTGTTCAGCTGCGTTCAAAGAAAGTGTTCCTACGTATGTTTACATCAAAGTTGTTCACAATACTCATCCATCCACAGAATTTTAAATGTAGTCAGATATGTAAACATTTAGCTGCGATTAGCGCTGTTGCCTTTGGATGTCTTCAGGAAAAAAGCATCTACATGAGTGCTGAAGCTTTAAATAAAAGTGAAACCATCAACAAAAGCCCGTCCTCTACTATGTTTACAAATACAAGCGCTGCCGTTTCTGGTTAATGATGTAAGAACTTGCCTGTATTTTGGAATGGATGTGTGAATGGTCTATTCCGTAATGTCCTTGACTCTGTGAACAGCGCTTTTTTAAATTTACTGGTAAAGTCGTTCCGGAAATTTTCCAGGTGTTTACCAGTATCCCTGTGTAAAAAGGGCTATTATTTACTTATTAAGCCTATTGTATAGTATTTAATACACACATTTTGTAAGGCCTGTATAATAATAACATAATTATAAAGCATATACAGACTTGATGCATTATATAAACATGTCTGCCTTCAGATTATGGTACATTTGACTTTTTGATGCTAAATGTTTCCTGATGTTTATAAAGTAAATGCAAGAATTTACATATCGCTAATATTTCAAAATACACCCTTATTGGACTGACACACCCTTTGGTTTAAAATTATGAATTTATTTAATTATTTATTTATTTACTTTTAGGAAATAACGTATAAGTTTGATCAAATATTTACAGTTGAAGTCAGAATTATTAGCCCCCCTTTGATTTATACATTTTTATTATTTTTAAAATATTTCGCAAATGATGTTTAACAGATCAAGGAAATTTTCACAGTATATCTGATAATATTATTTCTTCTGGAGAAAGTTTTATTTGATTTCATTCGGCAGGAATAAAAGCCGTTTTAATTTTTTTAAAAGCAATTTAAGGTCAAAACTATTAGTATTTAGGCTATATATTTTTTCGATAGTCTACAGAACAAACCATCGTTATTCAATAACTTGCCTAATCCCCTTAACCTGCCCAGTTAATTCAGTTGACCTAGTTAAGCATTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTAAAAAAATATCTAGTCAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAGATGAGTTATTAAAATTATTATGTTTAGAAATGTGTTGAGAAAATCTGCTCTCCGTCAAGCAGAAATTGAGGAAAAAATAAACAGGGGGGCCAATAATTGTGGGGGGGCTAATAATTCTGACTTCAACTGTATTTTATACTGTTGCAAAGATGTCATTGATGTTGGTCGGCTTGATTTAGATAACTGCTTTTGCTCAGTTTAAAAGGAATATTTTTTATTTTCTCCTATATAATATTATATGAACCATACTGTAGAAGTCTGATGTTTTCAAATCTAAACAAAATGTAAAAAACATACATTTAAAATGAAAGTTTCAGTAAACTATACCAGTTCACCTCTTTCTATTCATTTTTTTTTACAAAATTAATTGTGTTTTTATTTATATATTTTTCCTCTTTGTTTTTACATTTATTTTTTTCTAACATCTCTATAG
Seq C2 exon
TTTATACCAATGCCTGTGTTATATGGAGTGTTCCTCTACATGGGTGTCTCCTCACTGAGAGGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952:ENSDART00000112879:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.3=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCTGCGGGTATCACCTT
R:
CTCTCAGTGAGGAGACACCCA
Band lengths:
313-2293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]