MmuINT0147238 @ mm9
Intron Retention
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15607691-15611408:+
Coord C1 exon
chr14:15607691-15607942
Coord A exon
chr14:15607943-15611339
Coord C2 exon
chr14:15611340-15611408
Length
3397 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTAGAAATTTTATTTACAGTTT
3' ss Score
4.52
Exon sequences
Seq C1 exon
AAAGGAGCTGGCTACCACCTTGACTTGCTCATGGTTGGTGTCATGTTGGGAGTCTGCTCTATCATGGGCTTGCCGTGGTTTGTGGCTGCGACAGTGTTGTCTATAAGTCATGTCAACAGCTTGAAAGTGGAGTCTGAGTGTTCTGCTCCAGGGGAGCAGCCCAAGTTTCTGGGAATTCGTGAACAGCGGGTTACAGGGCTGATGATTTTTATCCTGATGGGCCTCTCTGTGTTCATGACTTCAGTATTAAAG
Seq A exon
GTAAAACCCTTGTGGCAGTGTTCAACAATCTTATTTACCTTAACATTTATACTTAGTTGTAAAGAAATAAAACATTGAAATATGTGTGAGTATATAAAATCAACTTTTTTCACCTGTAATTTAAAATCCATAAAAGTTTAAAAATACCATTTGGCAGTGATTTTTGTGTAGTAAGCATGTGGGTTTATTATAGCTTATAGATCCATTAGTTACAGTCTGCAATTAGAAGTTAATCAACAGGTGGCTAGACCATAGTATCGAAAGTAATCGAACAATATGTAACAAAATTGGTTTCTTTAAAGTACTGTTAATGAACTTAATATGTTCTTTATACATAATGTGTTTCATTATAGAGCACATAAAATGAAAGTAGCAAATAAACACTAGAAAACAATAAAACAAAAACAAAATTACCAGTGAAGCATATAAGAAATTTTGTTAATCACATTTTTCTTATGTCCACATTTTGCAGATGTATATCCTACAGAAAATCGGGATTAAAAAAAACAATTCTGTAGCAAAGTATCTAGTCTGAAATTTTTTATTTATCATGTAAAAACCCAATTCCATATTTGTCTCTGCTTTTTTATTTTTGTTTTAAAGAAAATGGTTGAATAAAAGTTTACAGCATTTCTACAGTTGAAGAGACCAGTGTGTTAGCGTTAAAGGATATTCTTTATTGTTGGAATTTCTTGGGCTCATTTCATGGCGTCTTTACCAGTCTCGTTAAGTACCAAGTGTCTATGAACTACTTGCCGTGCCCTTAGGCATGGGAGGGAGCAGTAAATAGGGTACAGTGTGTTTTCATGTAGAAACTACACAGCCTACCAATGAAATTGATGGGTAACTAACACTGCACTGCTGTGTAGTGCTGATTGTATTTTAAAGGAACTCGGAGACAAGAGAAGTAGTTTATGTATTCTTTTGGGGGTGATGGCCCATTGAAGCTCTTTGAAATTTTCCCCTTACATCTTTTCTAATGAATTATATGTTGTATACAAAATAAAACTCAACTTAAACATGAAGAAAACTTTAAAATAAAACTCAGACTCGATATTGATTTTTCACTTTTCAAAAATAATTCTTTTTTTTGTTTTGTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTAAACTCAGAAATTCACCTGCCTCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCCAAAAATAATTCTTCACAGACAGTTCTTTCAACTTAGTGATTTAAATCAAGGAAAAAAAAGGTGTGTGTGTTCCTGTGTACACATGTACAATAGTGGGAATATGAAGGTCAGAGAACAACTTTTAAGAAACAGTTTCTGATCTTCTATAATTGGCTCACTCCAGAGACAACACTAAAATTTGTCTGGCTTACATAGCAGGGCTTTGACTTACAGATCCATTGACTGGTCCTCAATTCTGTTATTTAACTTACTCTGGTAGAATTGAGTATGGAGGCACATGTCTATAGTCCTAGCAGTTGGGCAAGTGTAGGATGCAGGTGGGACTAAGACAGAATTGTAAGTTAAAGCTAGCCTGCACTACATAGCGAGTCCCAGGCTATGTCAGGCTCAGTATGAGACCGTGCATTGAAATACAAGGGCAGGCAAGATGGATCAGTCAGGGAGGGCACTTGCCAGGTTTGACAAGATTGCTTTCATGCTCAGAATGCACATAGTGGACGGAGATCTGATTACTGCAAGTTTTCCTTGGATCTCCACATACACATCAAGATGTGCATGCGCTTGTGTGTAGGCATGCAAGCGTGCACACGCGCACACACACACACACACACACACACACGCGCGAAGGAAGAAAGGAAGTAACTTAGCTGCTCTGGCAGTTATCATCATTGTAACCTTAAGTACTGTTATAATTACATTTTTACACTTACGTTTATGTTTCCTAGAACAGAGATTTTCAAAGTCTGCTCCAAGGGCATTTTGGAGCCTCTGCCATCCTGTCGGGATTCCACCAGGGTCTTTCATTCTAAAGGCTACATATCTGTGAATGGCAGGGATTCCATGTATTGAATTCAAAAGAGGCTATTGCAGCATGCTGTCATATACTAAGTACAGGCACAAATTGAAGACCCTTTTTGCCTCCTGTTAAGCAGTACTAAAGAGGATTACAAAATGTAAAACAGTGCTATTCTATAATTACACTTTGTTTTAAAAACAATAGAGTTTCATAAAATTGTGTTACTGTGCCTGGCTCAATTGGTAAGGTGCTTGTTGTACAGGCATAAATCGTGAGTGCAGATCCCCAGCACCCATATGAATAAAGAGCCTGACATCCTGCCACCCTGGAAGTGAGACACATATCCTCTGAGACTGTTAGCTAGCCAGTTTTGCCTAATCGATGTGGTAAAGGACCCTGTCTCTAGATGGTGATGGTGATGATTAGTGGTAATAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTAGTAGTAGTAGTAATTCTAAAGGACTGGACATGGTGACACACTCCTTTGACCCCAGCATACAGGAGTAAGGAGAATCTCTGTGAGTTCAAGACCAGCTGGTCTACAGAGCAAGTGCAGGACAGCCAGGACTCTGTTTAACTTAGAAATCCTGCCTTGAAAAACAGTTAACTAAGTAAATTAAATAAAAAGGTAGAACATGATGGAGGAAGGCACCAGGCAGTTGACATCCACATATACATAGACAAGTGTACCCCCTTCAGTGTTCTTTATGCCAGCTTATCATGGTAATTAATATTATTGCTGTTATTTTTAACTTGATAGTAGCTATTTAAAATATCTTTTAATTTCATATACACAGCCAGGTTTTCCTACAGCTACATGCCAGGATGGGGGTTTGGCATCTGTATGCTGGAATGTTTGAAGGATATTATTAGCAAACCATGTTCCACTGAAGTGGTGCTGGGCAACAGTATTTTAATACTTTACTGAATGGTGATGTGTCAGCTACTTTGCTGAATGTTCGGTGTATTTGAAGAAATTTAATTGTACAGCAAGCTGAAGCACAGAAAGCTGTTTTTTAAACTGTTGACTGGAGTGCTCTTGCTCCTCATACCTGATCACAGTCCCTTTTAATGAGTGTGGTCTGTAGATCCACTGCCTCTCAAATGTATCATCAATCAACTGTCTGTAGATCCACTGCCTCTCAAATGTATCATCAATACACCTATTTGCTTCTTTCCTGTTGGAATGTTGGCCTAGTCCTTTTCACAAAAGAACTTTTAGTTCTGTCATCATTACTCATCAAATATATTTCTGTGCACTTATTACTGTCAAATTATTTCAGAACGATGAGTTCTAATTGTAGAAATTTTATTTACAG
Seq C2 exon
TTTATCCCAATGCCAGTTTTGTACGGTGTTTTTCTTTATATGGGAGTTTCATCGTTGAAAGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-Slc4a7:NM_001033270:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: