GgaINT0101757 @ galGal4
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39027512-39029965:-
Coord C1 exon
chr2:39029714-39029965
Coord A exon
chr2:39027581-39029713
Coord C2 exon
chr2:39027512-39027580
Length
2133 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GGTGTTGTTTTCCTCTGCAGTTT
3' ss Score
8.81
Exon sequences
Seq C1 exon
AAAGGCTGTGGTTATCATCTTGATCTTTTCATGGTTGGTATTATGTTGGGAGTCTGTTCCATAATGGGCTTACCGTGGTTTGTCGCAGCAACTGTCCTGTCTATAAGTCATGTTAACAGCCTTAAAGTTGAATCTGAGTGTTCTGCACCAGGAGAGCAACCAAAGTTTTTGGGAATCCGGGAGCAGCGAGTGACAGGATTGATGATTTTTGTCCTGATGGGGCTGTCAGTGTTCATGACCTCTGTGTTAAAG
Seq A exon
GTAGGAGTTTGACCGAAATACTTGGATTTTCTTTGTGCTTTTGATTTTCATATTGTGATATAATATTTCGTGACGTTCGTACATCGTATTACATCAAGTAATACATGTTTAGGTCCATTGTCAAACTGTGTTTTCAGCATCCAGTGTTGATTAAATAGAAACAACCAGTGGAGGGAGATGTGGGAAAATTGAACAAGCTAAAAGGATAGTGAGTAGAAAAGAAAGCAACCTTTGTCCATGTTGCATGATTTTTTTGCTAGTTGTTTTTTTAGATTCCCAAGTCTGTTTTACTCAAAATAGTTTTGTAATTCTTACGTGAATATATAAACGGAGAGAGAAAAGGAGTGTGATAAAGTTGCTTGAGCAGAAGTAATATAATATGGCCAGTGAAGCAGAAATCGAGTTCAAGAAGTGATAATCAGAAATTACATTGCCTACTTTTCTTTCTTTTTTACCTTTTTAAACTGCTTTTGAGGTCTAAAATGTAAAGATTATCTTTCAGCGTGTTGTGAAATGGAGGTAAAAAAGATTTTGCAGGTCAAATCAGGGCCTCAATGTACACTTTCTCTAAATTTATATCAGTTCAGTGTGCTTCCATTGCGTCAACTCCAGCAGTTAGGAGAGAGAAATAAATTAAAAAAACACAACTGTCATTTAAAAGACAAAATAGCAGTTGTGCCATAAAGTGCATAATTGCTGATATCTTTAAAGAACTTTGTAAAAGTCTCTTCAAGGACAGATCACAACTCAGTTCACAAACAGATAGCTTCTAAGCTGTGAATGAATAGGTGGTGGTAGGAAATAAACCCGTGAACATACAGCTGTAGTTTAGTAATTCTCATTACAAATTGTTATTTGTAATTACATATATACATACACATATATATACACATACACATATATATGAATTGCTGGCCATTTGTACAAGTTTAAGACCTTAGGGGTTTGAAAACAATAAGGTGATATTTATAAACAAATATTTAGATCAAACAATCTATGGTAGAAAAGCCACCAGGAGCTCAGCTTTATAACAGAGAACAGAGAATCAAAATCAGGAATATGAAAATGGATTTATTATTGCTCAGAAGATGAAGGTGATGATTGCTGAACCCTGGTGTTCATCCCACTTTTTAGCAGCTGGTTCTTGGAAAGTAAAACCTGCATTTGTTATGGGATCAAGGGTAATTTGAATGGGATTACTACAATTCATTCTCTGAAATACTTTTGTTTTTCACTGTGAGTGACTGTTATTGTTCAAAAGAAGAAAGGAGGACAATACCTTGAACTCCAGACTCTGTGCTTTTGCTTCATGTGTGAATGTATGCTGATTTAATTCAGTAGAAGTTAATGCTAATGAAGTATTAGCATGTCAAATTAAGTTGCACATGGTAAAGACACAATCTAATCCATGTACACACAGTAATTAATCCCTAGGGCATAGTTTCATTCCACGCTATTTTAAATTTCACTGAAGGCTTTTGTTCAGGCTTGATGGCAGCAGTTTCTATTAAGATTTCTTTACTGAGAATTTCAATCAGTTTGGGAGCAAAGTAAGCTTTATTTGCTTTGTGTAGGCTGCACATGTGTGATGCAGGTGCCACTGAAATCAGTGGACAACTTCATTATCTTAATAAGTTTTCAATTGATTTTACTGCAAACCTAGCCCTGAACAAAGGTTAACAGTTACGGCTTCATTTGTTTCATGTGCTCTGGGAAAACTGTGTTAGTGAGGAAAAAAATTAAACTTCATATGACAGATTTCCTGAAGTTGGTTGTCCCAGTATAGTTCTTATCAAATAGCAACTTTATACCAGTATTGTTAGCATTAATAGAAACACTGGTTGCAACCTAGAAAACGTAATCCATGGGCAGTCAAGACAACTACTTTTTAATCCTGATGACAGCCATATTATCTCCAGGGAAATGACACAGGTCCTTCTGCAGCTCCCAACTATTTTTGCTTTTAATGCTGCATTTATTCCTTCTATAAATAGAGCATTAGCCTTTGTAGATTTTCACATAAGTACAACAGGAATGAAAATAATTTGGTTCATATCTTTCACTTATATAAACTGCTAAGTTGTATCATGTTGATTCTACAAGTAACTCCATTGGTGTTGTTTTCCTCTGCAG
Seq C2 exon
TTTATTCCAATGCCAGTTCTGTACGGTGTCTTTCTTTACATGGGAGTGTCTTCATTAAAGGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(4.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]