DreINT0151597 @ danRer10
Intron Retention
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42797716-42800367:-
Coord C1 exon
chr16:42800194-42800367
Coord A exon
chr16:42797848-42800193
Coord C2 exon
chr16:42797716-42797847
Length
2346 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTGTAAATTGTCTTCTGCAGGTT
3' ss Score
10.33
Exon sequences
Seq C1 exon
TTCTTTGACCGTATTAAGCTGTTTGGGATGCCAGCAAAGCACCAGCCTGACCTGATCTACCTGAGATACGTGCCACTGTGGAAGGTTCACATATTCACATTAGTTCAGCTCACCTGCCTGGTGCTTCTGTGGGTCATTAAAGTGTCTGCAGCCGCTGTCGTCTTTCCTATGATG
Seq A exon
GTATGTGTAAAATTCAATCCTACTTTTAAACATTCATTTTGTGTATTTATTTATTTATTTTGTCTAATTTCACTTTGTCTACAGTCCATTAATTGTGTGATTGAATTACTCTTATCCACACAAAGTATTAATCACAATTACATATGTGGCAATTACACGTTCAGAATTTTAAATGCATTGATGTTCATAACTCCTCTAAAATATGTTCTCCTTTCTTACCTGTTTTTCTCTATGAAGCCCTCAGTTTTGGATTTTAATAGGTTTTAGAAACAAAGAAGAAAAGGTATTTTGGTTTGAGAAAAAGATTTTTAAGTGCAATGCATTAAAATCATGTCATACATCAGATATTGTTGATGTTGTTATTTGAGATTTGAAAAAAATACCATAGCTATATATATGCAGTATAATACAGAGACACGGAAGGGACATGATGGTGGGGAAAAATGGGTGGAAAAAAACAAACTGAGTGATAGGAAAATCGATATATTTTGAATCTGTAAGTATAAGTAAAATCTATAAGTTTTTGTGTTCCCTCGCAAAGATTCATTTTCATTCATTTTCTTGTCGGCTTAGTCCCTTTATTAATCCGGTGTCGCCACATCGGAATGAACCGCCAACTTATCCAGCAAGTTTTTACGCAGCGGATGCCTTCCAGCCACAACCCATCTCTGGGAAACATCCACACACACACACACTCATACGGACAATTTAGCCTACCCAATTCACCTGTACCACATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCGAAGGCAGGGAAAACATACAAACTCCACACAGAAACGCCAACTGAGCTGAGGTTCGAACCAGCGACCTACCTACCTAGCGACAGCACTACCTACTGCGCCACTGCCTCGCCCCTCGCTAAGATGTTTTGCGTTATCTCGCAAAACACTTCCTGTTTATTTCATACATGTCAACCCTCCCTTTTTTGTCAGGATTCTCCAGTATTTTACCATTCTATCCCGCTATCATTCTATTATTAAGTATTTTCACATTTTTTTCATATATTTTTAATCTTGAACGTACTTTGAAATTAATATAAAAATGTCTTCATTCACTTTCTTTTCATTAAAGCTGTGGGTTGATCATTGTCCTTTAAAGGCAACCTCTGAATCCGCAAATGCATGTAAGAGCACCGACAGATGCGGTCCAAATGATAAACTGATCCCAGATCAGCTTCTGTACACGCCATTTAAAGTGTCACCTCTGTTATCAAACAAGTGAAGAGCAGCAGATGAATCTCTTTTGTTTGATAACAGAAGTGTCACTGTAAGAATGCACAGATCTATAATGAAAGCATTCGATTACTTTAGTAACTGTTTGTGCTTATTTATGAAAAGAAATTGTTGTTTAAAATAAAACATGCAGGACGGACATCTTTGCATATTAATAAGTGTATATGTCTGTTTACACCCAAATCCCAAAGTGTCCTGCACTTCGCTCCTCTTTAAATGGTGTGTACAGAAGCTGATCTGGGATCAGTTTATCATACAGAGCGCGTCCGTCAGTCAGCGCTTATACATGCATTCGCTGATTCAGAGGTTGCTTATGAAGGGCGACGATCGACAAAAAGCTTTGATGAATAGATAGTAAATGCAGACATTTCTATATTCATTTTAACAAGCTTTCAAGTTTAAAAATATGGGAGAAATATGGAAAAAGGATGATAACTGAATGGAATGGTAGTTTTTTTTACTCTCTCTCCAATTTTATTTTTCTCCCACCAGTTTTTTTCCCCCCACAATCACGATTCTTTTGGGTCTCCGTAGTATAACCTCAATATATGGGGATATGTATGGTTTTGATAAATGACATGATTAAAATTGTGTATATGGTTGAAAAAACTAAACTGAACGTTTGAAGTAGATAAAAAAAAGTTTTTCAAAATTGTCCTTAGACAAGAATGGGTGTTCATTAGTTTTATGACTTTGAAAGGTTTTGATCCACTTCATGTTTACTATTTTATTCTGAATTACTTATTTTATTTACTTTTAAAAATTTAAGCAATTCAATTCTATACATTGTAAAAAGTGTATTAAAAAAAGAAACTTACCAACTTATAGAATTGTTTTTGCAAAAAAGTGTAATGGCTTTAAAGACACTAGTATTACTAGATTAAATTGATTTTATAATTAGTATAATCATTTCTGTATGTGCACATTTACACACTGCTCCATTTAACCATGTTTATTGAAAATATTTCATATAAATCGTCATGCACACATTTTTTGTATTATTTAGATTTAACTGGTCAACATCCATTATTGCATGTATTTTCACTTCGTTCTTGTAAATTGTCTTCTGCAG
Seq C2 exon
GTTCTTGCTCTGGTATTTGTGCGGAAGCTTCTAGATTTCTGCTTTACTAAGAGAGAGCTCAGCTGGTTGGATGACTTGATGCCAGAAAGCAAGAAGAAAAAGGAGGATGACAAAAAGAAAAAAGCAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952:ENSDART00000112879:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(6.8=59.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]