GgaINT0101759 @ galGal3
Intron Retention
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38443038-38443672:-
Coord C1 exon
chr2:38443499-38443672
Coord A exon
chr2:38443170-38443498
Coord C2 exon
chr2:38443038-38443169
Length
329 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTTTTATGGTTCTCTTTAGGTT
3' ss Score
11.49
Exon sequences
Seq C1 exon
TTTTTTGACCGTATAAAATTGTTTGGAATGCCTGCCAAGCATCAACCTGACCTGATATATCTGCGTTATGTACCACTCTGGAAGGTCCATATCTTTACAGTTATTCAGCTCACTTGTCTAGTTCTTTTGTGGGTGATAAAAGCCTCTGCAGCTGCTGTTGTTTTCCCTATGATG
Seq A exon
GTAAGTTATCTATTCTACAAGTTAATCATTTGCCTAGAGTGTGTGCATCATCCAACATCTCTTCAGGATGTGTTTGCTACCTTATGAGGGAAGGGACTGAAAAAGAAACAAACTTCAGTAGCTGTTCACTTTTGAAACATGAGAACTCCTGAAAGTAAGCAATTCAGCTGTGAAAAGCTACAAAAGGGGAAATGATCTAACTTGGCAGTAAGATAAAACTGGTACTAGGAGAAAAGGCTGCGGTTAAAAACACCGAATGTACTGAAAGTGTGTGATAATATTTATTTCAGTAGTTTAATATCAGTGATTCCTTTTATGGTTCTCTTTAG
Seq C2 exon
GTTTTAGCATTAGTGTTCATTCGCAAGCTCATGGATTTATGTTTTACCAAAAGAGAGCTTAGCTGGCTCGATGATCTGATGCCAGAAAGTAAAAAGAAGAAAGAAGATGACAAAAAGAAAAAAGAGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405:ENSGALT00000018603:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTATAAAATTGTTTGGAATGCCT
R:
TCTTTCTTCTTTTTACTTTCTGGCA
Band lengths:
271-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]