DreINT0154660 @ danRer10
Intron Retention
Gene
ENSDARG00000005186 | sp4
Description
sp4 transcription factor [Source:ZFIN;Acc:ZDB-GENE-031202-3]
Coordinates
chr19:2619683-2624117:+
Coord C1 exon
chr19:2619683-2621090
Coord A exon
chr19:2621091-2623924
Coord C2 exon
chr19:2623925-2624117
Length
2834 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTCTGGATCCTCCCCACAGGTC
3' ss Score
11.66
Exon sequences
Seq C1 exon
GATGCACAGCCGTCTCCTCTTGCATTGCTTGCAGCGACGTGCAGTAAAATCGGAGGTGTTGGCGCTGAGGGTCAGGCGGCTGCACAACAGCAGATAATAATCGACCCGAGCCAAGGTCTGCTTCAGCTGCAGAACCCCACACAGCAGCTGGAGCTGGTCCCGGCACAGCTCACCGGAAACGGCTGGCAGATCATCGCCACCTCCCCTGCAACCGCAACCAAGGACAGCATTCAACAGGCTGGCGCTAATGCAGCGTCCAGCGAAGCCGCAGCCGGCCGGAAAGTCAAGGCCGTCGGCTCTAATAATGCAGCGCAGCAGCAGTTTCAGATCATACAGGTGCAGAACCTGCCCAACTCGTCCGGCGGGATTCAGTATCAGGTCATCCCGCATCTTCAAACCGCTGACGGACAGCAGATCCAAATAAGCCCCAGCAACCCCGCAGCCTTAAGCGTTCAGCCCGAACAGATCCAGCTCATTTCCACCGGAAACAACCAAGCCATTCTGGCCACGCCACAGAGGACGGGATCCGCCAGCATCGTCCAAAACCAGACCATCCCGCTTCAGATCAGGCCGTCATTTCCTCTGCAGCTCCAGACCATTCAGGGTACGCAAGCACCAATGGTGACTACATTACCCATAAACCTCGGCGGCGTGACTTTGGCTCTGCCGGTGATCAATAACGTAGCAGGAGCCGGCGGTTCTGTTCAGCTTCTCCAATCCAGCGATGGCAGCATCTCCAATGGAAACCAGCTGATCACGACGGTCACAACAAGCACAGCAGATTCCACAGGGAGTTCGACCTCCACCACGACCGCCACAGGAAGCGATTCGGTCGTCGTGACTTCAGCTGATGGACTATCTACGACGTCCATGGTGTCCGCCGAGAGCCCAAAGGATAATGAAGCAGATTTAACCCAATCCAACGGCCTCCAATCCACATCTGAGCAGGCCGGACAAATCCAGCAGTTCCAGATCGTGGGCCACCCGGTGCTCCAGCAGATCCAGATCCAGTCTCCGCAGCAGCAGGTGGTGCAGGGCTCCATACAGATCCAGCCCGGGCAGACTTTACAGCCGGTCCAGCAAAACCTCCAGCTGCAGGCCTTCCAGAACCCGGCGCAGGTGCTGATCCGGACGCCCACGCTCACGCCGTCGGGGCAGATCAGCTGGCAGACGGTGCAGGTGCAGAACGCAGGCATGCCCCAGCAGCTGACGCTCGCCCCGGTGGCGTCCAGCGCAGGCGGTGGGACGTTTGCTCAGATTGCTCCGCTGACGCTCGGAGGCTCACCTATCACGCTCAGCGCCGCGCAGCTGCCCGCGGGCTCAGGGGTGCAGACGGTCAACATTGCCGGTCTGGGGGCGGCTGGAGTGCAGGTGCAGGGCGTCCCGCTCACCATCACCGGTGTACAAG
Seq A exon
GTAAGACCCTCCAGGAGTCCTGCGGAAGAGGGTAGTTGTGTATTCATGTAAAGCAGGAGGGCTGGAGTTGATGTTTGATTCATGTTTAATCGAGGTGTGTGTTTGGTCATATATGCAAGCAAATTAATCCTTTTTAGGACTGTTTTTGCGTATACAGAATGACAGTGAAGCATGTTTTTGAGATTCGTTTATTTATTTTCGATATTTTATATAAGGCTGATTTATACTTCTGCATCAAACGCCGGCGTATGCTACGGCGCTGACGCATAGCCCTTCGCCGTGGCCATCGGCATCACTGACGTGCACCTCTCAAAAAATTTAACTACACGTCGCAACCGCGTAGCGCAAGCTCTGTGATTGGTCGGCTTGCTAGCGCCGACGAGTCTGGGCGGGACTGAGAGCCGCGCGAATGGCGTGAGCGATTGTTTACAAGTGTGGAGTCCCGTGAAGGAGCTCCGGATGGAAAGTTTTGTTCTGTGTTTACCTCATGGTTAAAGTTGTTGCACGTCCGCCGGTTCCTGCCTCAAAATGAGCGAGTTTGAGCCACTTGTACATCCAGGAAGTGTTCAGGAGAAGCAAAACAGAAGCGAAGAAACTCGACACAGAGGAACATTTACACCTTACTGCCCACTAGCGTTTCGGAAGTGTTAATGCAGACCAACAGAGACAGCGTGCAGAAGTATAAATGCACAGCCACGCGCGTTGCCTGCACGGTGAGTTACGCCGGTCACTTGATGCAGAAGTATAAACCAGGCTTTACTCTCAGAGGTGATTTTAGCCGGCTGCTAGCTCTCTGCAACTCTCACATGGTCGCCCACTGACGCTAAGCAGGGCTGCGCCTGGTCAGTACCTGGATGGGAGACCACATGGGAAAGCTAGGTTGCTGCTGGAAGTGGTGGGTCCTAATGCCCCAGTATAGTGAAGGGGGACTCTCTATACTGCTGTCTTTCGGATGAGACGTTAAACCGAGGTCCCGACTCTGTGGTCGTTAAAAATCCTAGGATGTCCTTCAAGGTTTAACCCTGGCATCCTGGCCAAATTTGCCCACTGTCCATCATTGCCTCTTAACCATCCCCATATTAGAATTGGCTCTCCACCAATAAGCTGGTGTGTGGTGTGTGACTGCTGTCACATCATCCAGGTGGATGCTGCACACTGGTGGTGGATATGGAGATTCCCTCCAAAAATGTGTCAATGCGTTATATACATGTAAGGAATTATTATTATTGGATATTATAAATGGATATTTATAAAAACTAATATCCATATTGCAAATGGTAATGCAATTAAAAATGTAAAAAAATATATTGAAAATTATTGCATGTACATAAGCACAACTACATTAAAACTGGACAAACATTAGGATGGTTTGCTGTTGAAATACTGTACATTTTAAATATGTTAACAAATAAAAATAATTCTTAAATAGAATTTTTTTGTTTCTAAAATATTAGATTATATTATACATGGTTATTTATTTAAAAGAATATTCATATTCCAAATGTTACTTAAATGTTGCATTTATAGCAGCACAACTACATTAAAACTGGACAAACATTAGGATGATTTGGTGTAGAATTATCGTAGATTTTAAATATGTTATCAATCAAAAAAAATACTTGAATAAATCATATTTTTTTAAACATTTTAAAAATATTTTTTCTTTGGGGAGGGTGCTTAAAAAATGCTATTGAGCATTACAGTATAGTGGTTAGAAAACTTGGCCTCATTCAAATACAATTTTTTACTTTGCTTAATTTTTTTGGTCAAATATAATCTAAATATGATATGTTTTCAGCAATTACCAATATACTGTTACTCATATATTAAAAATGGTTAAATATGTAAACATAATTTTTATTATAACTATTTAATTTTGATATTTAATTTGAAATTTTAACTATTCTCCCCAAACAGGGACTGGAACAGTAGCATGAAATGCAGTTGTTTTCCATCAACTTTGTATTTCTCATGAAGTAAATCAGCAAATGAAGGCGTTTATTTAGTATGAGTCAGAGTCTGAATGTTATTTCCAAATCCTTCTTGAAGTGTCAGATTTCAAACTCTTTGTTATTTGCCTTTGCAAGTTTACTCCAGCAATTCATTTGGTCGGATTCTTCTAGAAATGCATTTAACTCCACTATTAACTATTAACTATTGAGCTCTAAATCTATTAAGATGCTCAAAGTTGGCCCATTCTAACATTCAATTTGGCCCAACATCCCAGAATGATGGAGAGGGCTGGGGCGGAGGCCTTTAAAAGAGATCATTATTTCTAATTTGACGTAACCTTTTTTTGTTTATTTGTTTGTTTTATTGCTGAGCTACAAAAAAAGCAAACTGAAATTAAAGCTTTTAATTAAAGTTGTAAATTAATCAGATTTTAAAAATGTAAATACTGCCACTCGATGGGTAGAGAGGACTATGCAGAAGACATCAGCGTGCAAATCAAGGCAAAAACTAGAGTATCTCCATTCTGTTATAAGTGTGATTTGTTTTTACTGTAATAAGTTAATTATAAAATGTAAAAGAAGCTGTATTATTTAATATAAAGCAGTGTTTTCTAGTTATTTTTAAATATTAATAAATAAAGGAGGAAATTACCAATGATAACTATATTAACCTTCGGCCCGCTAGCCTCACTCAAGTTTGGTTTTTGGCCCTTCATATGAAAAAGCTTGGCCACCCCTGCTGTAAATGACACCTAGTGATTTTTCTTTTGTATCCTAAAATTGATTCCACATCCATTAACGTCCTTGTGCTGAGTATTTTTTCTGTCTGCTGGTCATAGAGTGATGTAATCAGCAGTGGCTGTTTCTGGATCCTCCCCACAG
Seq C2 exon
GTCAACAGCAGGGTCAGGATGGGGTCAAAGTTCAGTCCGCTCCAGTGACGGTGACCGTTGGGAACATCAGCAACGCTGTGAGTCCTGAGCAGATGGGGCAGGTCCAGAGCCCGTCCGATCAGGAGGGTCAACCCAGCAAGAGGCTGCGCAGGGTGGCCTGTTCCTGCCCCAACTGCAGAGATGGAGAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005186:ENSDART00000097528:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.669
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]