DreINT0156547 @ danRer10
Intron Retention
Gene
ENSDARG00000037363 | st5
Description
suppression of tumorigenicity 5 [Source:ZFIN;Acc:ZDB-GENE-030131-2547]
Coordinates
chr7:28244761-28250140:-
Coord C1 exon
chr7:28250042-28250140
Coord A exon
chr7:28246012-28250041
Coord C2 exon
chr7:28244761-28246011
Length
4030 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCGTTTACTTTGTTTTTTAGGTG
3' ss Score
10.98
Exon sequences
Seq C1 exon
CAGGTGAGGAGGCTGTCAAAGGGAGATGACTGCCAACAAGAGCTCCAAAACTGCACCAAGAGCAGGAGCGGCTAAAGGTTCACAGGAAAACTCAGACAG
Seq A exon
GTGAGAGTCATAGTGATGAGTCAGCAGCCTTTATCCATTGTTTGTGCTATTTCAGTTTGTTTTACAGGAAGCTGTTGTGACCACTGTGGTAAAGCAGAAACAATACATGAAGTTACCACCAGTTGATGCAACTCCCAAAGGCTGTTTCACAACAATGATAACTATACTGATAACTTTCTAAGAATTGGCCAAATCACAAGTCTAACTATCAGGTCATAGAGGAACAAAGTCACTTAAATCAGTTAAAGAGTACATTCTTTTTTTTAAACTGATGAACATTAAGAGGCAGTTAGAATCTATCAGCTTCATAGTGCTTAGACATACGAAGCAGTAGGTGAAATAAGCAATGTAATAATTACAGTATGAACATTCTTATTAATATGTGCTGTATTTGACATCTCTGTATATTGTAGGTTTTATATTTAGAAAATGATGATAAATCTTGTAAATATTTGAAAGGCATCTGATAACAAAACTTTTATCCATAATCGAGGAGCAGTTGAAACAGATAATTGAGTTCAACGGTGCTTCATAGGCCAAACGGTTGTATACAAAGCTAAAGTAAACATCCTGGTTATGAGAAAAAGCCAGGAAGTTGATTAGAAAAGAGGCTTTGTTCTATTTGTGGCCTTTGCTTAACTGTGGAGCCTTGCTATCAGAACAAGTGAAGAACGAGCAGTCTTTGAAGAGAGAGAGGAGTTACTTTCATAATTACCTACGAACACTCTCTGATGTCAGAGATATTTACCAAAGGAAATTGTGATTTATGCGAAGCAGTGTGGGGGGAAAATGATGGCATAGTTTTTGCTAGCCTCTTTTCCTAGACATGGATATTACGGCTTCTGCTGTAAATCACAAGAAAAAGGAGAATGCTGAAGAAGCAGATTTATGTCAGATGAGGGTGGCGGTAGGTAGGCCTTGCACTGAGTATATGGCCTTTTTATAGCAAAGATAATAGCTGAAAAAATAACTCAATCATAGATGAAATATCCACATTTTTGTGGGGGAGAACCCACTGGCTCTGGGCTTGACATATTTCTTTTGATGTGTGTGCCTGGAACCTCATAGTTTCACCATCCTGGCCCAGCTCTCAAACAGGAAATGGCCTGTGGTTGACATTGCCCTCAAGACCCAGGAGAAGCCAAACCAGCTCTGGCATCCTATTCGGTCCATGTGTGGCCAGACCAGCTGGCTTCCCCAGAGCTGGCCCTGTTTTTACTGGCCCTGTCCGGCCTCTTAGAGAACCTCCTCAGACCACAGACGCAAACTCACGGTGGACTCAATGAAAGAATTTCCAAACTTATGTTTGCTTTTTGTGAAAAGGATTTAGCATGAGCCTAATAGTGCAGTTATAGAAACAATCATTCATGCTCTGTTGGAGAGGTGGTCCAGGCAGTTGTGGAGGTATTTTTAGACATACAGTGTTTGTCTATAGAAAGCATGTGAACAAAGATTATAGAAGTTTCATTGTGCCATAAATACCACCCTCATTGCAAAGATTGTCCTTCTAAACAATATTATCCGTCTCCTTTTGACAGATTTGGCATCTGTTCATCCCTTTCCTTTGATTATCTAGGATTAGATCGTTGTTCACAAGTCAAGGATCTATTGTAAAGGCTGAAACTTTGACATGTGATATATTAGTCTGACTCAAGTATGACATTTTTCTGTCGCTGTTTTATGTTAAGAGACTTATAGCTCTGCCTTTAGAGGATGTACTGTACCTATTTCTTTATTTCCCTTCTGATCAGTTCTTTTGTGTACATGATTTTGAGTAGTTTCACGACTATACATTTAGTTAAAGGTGCAGTAGTAGGTCATTGTCTTCAGAAACATTTTTTGTTGTACTGATTGAAAGTCAAATAATCTAAATGCATTTCTGTCTATTTTTATATTCTCATTAGGGGATCAAACCAAAAAATGTTCATCCAATAAAATATCGTCGGGCCGACATTTCCCATAATTCTGTCAACAAATATAGATTTGTGCATCTGCGCATCTTTGTTCACTTTTATTATTTATTTATTATTTTATTATTTATTATTAACTTTTAATAATCCTCTGTTCGGTTTGAAAGGATTTTATTCATGCAGAACTTATGTAGATTGTGTTGTTATGAAGGGTTATATGCACAGAAGTGTTGTTCAGCCACTGAAGTCTTCCGGCGAAATATTGATGTGACTATTTTCAGTTTCATAAGGGCCTTTTACAGCAGTAATAGTGTAGATTTTTATTTAGTTTAACAACAAAACATCAGTAAATAGTGGTATTTCACTTGCCTGCTTTACAGAGCTGAAGTTGTTTATATATTTACATTGGTTCATTATGAACATTGACAGCCTGTGACGCTTTCCCTGTATTGTTTACCATGCTACTTTAAATATTCAGTCTGACATAGTATGTAAGTATGGCTTAATAATAAGTGTAATTCCTGTACACCGCTGAAAAACCACTAAGTATATTTGTAACTGGTGAATGACATGATTTAGTGGGTTGTCTGCAGTCATGTCACTGTGCGTGTGTTCGTGATTTCAGGAGGCTTGGCTTTGGACAGCAGGGGAGTAACTGTTTCAAAGATATTATGCTAACTGGTTTTTGGCAATCACCTACTGCACCTTTAAGAAATTTAGGTAAAAAATGAGTGAAAATGAATGAATAAATTAAGGATTCAATAATATTATTTGTGTAGATGAATCAAAGTGATAATATAAACTTTTTAAAAGTTTGGATATATTAATATAATGTTTTAAATCTAATGTTCTTGTATGTTATTTTTAAAATTTTAAGTATTATTAATTTGAATGCATAATTATAAAATATTATTTAATAATGTGAGGGCAAAGCTGAATTTACCCCAATCTTTAGCATCATGTGATCATATTGTTCAGATTTTTCTCCTCAATTAGCATTTTACATAATTTAATGGATACTTGCAGAATAACTGCTTTGATAAAAAAATAAAATAAAAAAAAAATAAATAAATGTATCTGCTTTCATGTATTTATAAGTCACTTACTTTTCAATATGTCTTCCTTTATTATAGATTGTAGTGTAGTTGTAAGTTTTAGATTGTAATGTCCTTTATAGCTACTTCTGATGATGCCATTATGGTTAATTGCTTGTTTTGAGTGAACCTGGGAAAATGTTAAATTCAGATAACCAATATAATTGTTCTACTTTTAATATGGTGCTTTCGTGAATGTGAGGGTGCTGCTGACTGCAGGACCTGCAAGGCTACAAATAGCATGGTAGTTCTCTTTGCTTTTTCTTGGGAAGGGCGTTATGATGAGGTTTTTAGTTGATCTGTCCCAACCTGCACCCTGGATCATACTCTTGGCCTCTTCCCAGCTTGCACTTGTTATTCTAACCACCGCTGTGACATCAGAGCCGCCTACCTCAGTTTCACTGAGGTGTGGGCTAAGTCGAGTTCTTGGAACCTCATGAGTAACATTTCATTTAGAGGCGCAAGAGAAAGTGTCTGAGAAGACTGAAATGAGGTCTGAAGTGTCTTTAATCTCATTGCTCAGCAGTGAGCAGCGTCTGTTTGCTAAGTGAATGGTGGGCTTGGTCATGATGAGCAGGCTGAAGGTGACATGTAGGCAGAAAGAAAGAGTTGCTACAGAGGACACAGGGCTAAGAGAAAAAGCTGACAGTTATTAAGGGTGAGTTCATTGAGGAGGGGCGGGGGGGCTGATCAGTATATGTGGAACAATCTATGTATTATTTAATTTATTCTATTTGTGCTGGCTTGATGTGGTTGGTTCTTATGCTGCCACATTTGTTTCCGATTGCTGTTGTTCTTTCCCATATCTTTCATACATAAACTGATCTTTGCTTTATATCTAAAAGCTTGTTGCATTACTAGTAGTATGTTGTTGCTTGTCATATTGACTTGTCCTTATTTGAACCCCTTTTGTAGTAATCTTTTTTGATTAGTGTCTTATTCACAGTAACATTATGAGACAAATGATATTTTGCTGTATCAAGCACAAGGGTTTCTTACACTTTGCTCGTTTACTTTGTTTTTTAG
Seq C2 exon
GTGTCAATCTGTGTCCCCACCACCAATTCTTACTACTGGAAAAGAGCCAGTTTCCTCTTACCTCAGTGGCAGCGAGGATACCAGTCAGCAAGGAAAGTACGGTAAAGCTGATGCTAAACTCTGGACTCAAAAGAACTGGAGCTGTAAGACTGCCAGCTTGAGAAGTGGCGCCTCGCTCTCCACTGACTTTGAATTTCAAAGCAGGCTGACAAAATCTAGGAGCATTAGCTGTCTGGACAAGAAGCTCACCATCCATAAGCCACCAAGTGGTGATAGGCAGGATCAGAAGGAGAATCAGCCACAACAGACCCCCCCTATTGGGGATGGATTGAATACTGGACTGCTCAGCTTAAGTACTACTTCAGTAGGACCTTCTAAGCTTGGGCACAAGCGAACATTCTCACTCAGTCATACAGGGACGTGCACCTCATCAATCGCCATACGCAAAAAGATCTCGCAATGGGAGGGTCGGAAGGAGGCTTTGTCTAGGATGAGCCTTTGCCTTGAGAAGAGGCCTGGAGGTGGGAGCGAGGGTTGCCCAAGCCTGCTGTCCTCACCCTGCAGTGAGACGACCTTTGACTTTAAAGGGGTCAGGAGGATGAGCACGGCATTTTCTGAGTGCTCCTACCCCGAGACTGAGGAAGATGAGCACACATCAGATCGTGAAGCTCCTATAAGGTTCCAGAAGAGGCCTTCAAAGACAGAGTCCTCAGGGATTTTCCTCCGCACATTCTCGGCACGCAAGGAGACCTCAGCCGTGCTCAGCCGCATTCAAAAAATTGAACAAGCCTTGAAGGAAAGTCCTACTTCATCCCCACCACAGTATCTTAGCAATTGCTATGGCCTTGACAAGTCAAGACAGAAGTCTTTTACCATCAGTGGGACAGAGGACTTGGATAGCACTTGTGGCAGCAAGCGGAGTAGCATCTGCTCTGTGGCAACTGAACCTGATGTCTCTCCTGGGTCTGACAGATTGTTCAAGCTCAAGCAAAGATTCAGCATCAGCTCTACCAGGTCAGAGAGCCCAGAACTCCCTTCTGCACAGGACTCTCCTGGAATTACAGTGAACCCTTTGCCCAAACCCAAACGAACGTTTGAGTATGATGCGAACCGGAATCACAAAAGCTTGCTGCCTGGTAATGGACTACCTCCCTCAACTGAATCTCCACCTCCACTTCCTTCCACTCCAGCACCTGCTATAGTGACAAATTCCAAGACTGATGAAAGTAAGCTTAAGAAGACTCAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037363:ENSDART00000133050:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]