DreINT0160555 @ danRer10
Intron Retention
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5403237-5404117:-
Coord C1 exon
chr12:5404035-5404117
Coord A exon
chr12:5403355-5404034
Coord C2 exon
chr12:5403237-5403354
Length
680 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
TGTGCTACTTTTGTTCGCAGAGC
3' ss Score
9.53
Exon sequences
Seq C1 exon
GAACCTCCCTGCAAAGTCGGAGGAGGAAGCACAGCGCCACCGTCAGGAGTATGATGAGATGGTGGCGGAGGCCAAGAAGAGAG
Seq A exon
GTATGCTCTTTTCTTTTTTTTTCTAATTTAAGTTGTCAATAAAAAGGATATCCACGAGGTCTTAAAATGTGTTCAATTCACAGAAATATTGTCTTGTGTGTCTTAAATCATTAATTAATTGACTTTTTTTTTTACTTATTTTCCTCTGTCCAAGTAAAGCTACCCAATCAGGCCGACATCCATCCAATCACCAACAATCCATCTTAATAACAAAAAATCTTAGTAACAATACAAATAAGAAAACCTGGGGATTTTAGCAGCATGTGGATACGTAATTAAATATACAATTGTAAAACAACACTGTGTAAAATTCACTGCGTAAATGGTGCCTAGAAAAATTAATAATCAATCTTTGTGAGTGCAAAAATGTGTCAGTGATCATAAATGTAAATAGAAATATTATTATTTTGAGTTGTATAGTACAATTGATCTTGAGTTTTATGATAATCGCCTCAGTTATTGACATTAATGACAATTGTAGGCCAAAAATAAACGTACAGAAAATGCCTTTATATAAACCAGACTTGTTCACAAAAGAGATTGACCCATACAGTACAATTCCACAATAATGTATCTTGCATAAGTTAGTCATTAAATGAGGAAATGATCAATTTCATGTTGTCTGGAATGCTTTTGGCCCTCTGTTTCGTTAATGTTTAATGTGCTACTTTTGTTCGCAG
Seq C2 exon
AGCTAAAAGAGGCTCAGAAGAAGAAAAAGCAGATGAAAGAAAGGTTTAAACAGGAAGAGAGCATCGCTAACGCCATGGTGGTTTGGAACACTGAAATCCTCCCTAACTGGGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771:ENSDART00000109305:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTCCCTGCAAAGTCGG
R:
CCAGTTAGGGAGGATTTCAGTGT
Band lengths:
193-873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]