GgaINT0040075 @ galGal4
Intron Retention
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19634500-19636108:+
Coord C1 exon
chr6:19634500-19634582
Coord A exon
chr6:19634583-19635990
Coord C2 exon
chr6:19635991-19636108
Length
1408 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TAATATGTTTTCTTTAACAGAAA
3' ss Score
9.71
Exon sequences
Seq C1 exon
AAATCTTCCTGCCAAATCAGTGGAAGAAGCTTTACGTCACCGACAAGAATATGATGAAATGGTGGCAGAGGCAAAAAAACGAG
Seq A exon
GTATGTTAACTGCTAATCATCACTATAATTCTGTTTAACTGTATAGCAAAAATATCTTCTGGCTAGTAGGTACAGTAAAGAACAACCTTGTTTAATATTCAGGATTATTTTCTGATATGCTTGTGCATATAACTTAAAAACCAAGCACGATTCTCTTTTTTTCCTATTCCAGCACAGTGAATGTAACTAGATTCAAAAATCAGTTTAACTTTTTTTTCATTTTTAAGTGGAAATTTGATTTTTTTTTAAACTGCTTGCATAATGTGATTGTCTGAAAACTTTCTGTTTACTTGGACTCCTTTTTCAAGCAGTGTTGCTACACTTCTTACTGAGAACTGAAGTAGAATAAAGCCGACCACCTAAAGATTTTTTTTTACAGGCATTTGATATCAGTGTCAATGTGAAGACAGATGAAAACCTTGTTTTTCAAATCAGCTGTTTCTGTGAATCTTCCTACTTCCATTAGATCTGCTTTTTAAATTACATTTTTTTCATTTGGGACTGTGGCAATCTATGAATAGTTTGTTGAAAGGACTTCTGTATTCTCATGCCTAGCGTTCAGGGAATAAGCTATTTTAAGAATTCATGCTGCATATTTTACTTGGGCTGTTGTCAGTCAGATTTAAGCTCCTGAACTCACTGTGAGCCTCTATGGATCTGTAGCAGCTTGCTCTGAAAGATGTATTGAGAAATCCAAGGCATATGACAACGTAAATACTGCAGGAGAAGAGTGAAATCTGGTAAAGTATGAGCTTTGAAGGGCCAGTGATGTGTAATGTTCTAGTATGTGTGCCCTAGTATTCATTAAATTAACAGCTGTTACACACAAAGCTTCATTAAAAGCTTAATGAAGCTGTTCAGCCATATACGTTTACCAGGAATGGCAAGCTTTCTTTTTTGATTTGCCTAATGCATGCAGAAATAGAAAATGTCTTGCCATTTCACAGTGATTTTTTTTTTTAGTGATGGCAAAGCTCAGTTCTTTCTAGACATTTTAATGTGAAGGAATCTTCAAATGATCAATTTCTAACGAAATACTCCTGCTTAATGGCTTTGAAGAGTGGTTTAACTCAACACTTACTTATTTGACGGTTAAAGAAAAATGTAAACGCGGCAAATCTGGCATAGAAATAGCTACAGCAGACATGAAACTTCGTACTGCTTTTTTATTGTTATTTTTAAGAGTAGAACATGTAATAACTATTTTGTTTGCATCTTGCATTGTTTTCATAACGTCTTTTTTATATAATTTGTAACTTGCCTACAATAATCAGGAAAAGTATTGGTTAGCTCATGAGCAAATGTAATGTACCTTTGATCTTTCATCTACAATCCACATAATTAGGTAGCAACTGAATTACTTACCTAATCACTTATAACAGAATTTTTAATATGTTTTCTTTAACAG
Seq C2 exon
AAATTAAAGAAGCACATAAAAGGAAGAAAATAATGAGAGAGCGTTTCAAGCAAGAAGACAATATTGCTAGTGCTATGGTGATTTGGGTCAATGAAATACTACCTAACTGGGAAGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538:ENSGALT00000010562:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGCCAAATCAGTGGA
R:
ATGCCTTCCCAGTTAGGTAGT
Band lengths:
198-1606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]