GgaINT0040075 @ galGal3
Intron Retention
Gene
ENSGALG00000006538 | TBC1D12
Description
NA
Coordinates
chr6:21155870-21160351:+
Coord C1 exon
chr6:21155870-21155952
Coord A exon
chr6:21155953-21160233
Coord C2 exon
chr6:21160234-21160351
Length
4281 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TAATATGTTTTCTTTAACAGAAA
3' ss Score
9.71
Exon sequences
Seq C1 exon
AAATCTTCCTGCCAAATCAGTGGAAGAAGCTTTACGTCACCGACAAGAATATGATGAAATGGTGGCAGAGGCAAAAAAACGAG
Seq A exon
GTATGTTAACTGCTAATCATCACTATAATTCTGTTTAACTGTATAGCAAAAATATCTTCTGGCTAGTAGGTACAGTAAAGAACAACCTTGTTTAATATTCAGGATTATTTTCTGATATGCTTGTGCATATAACTTAAAAACCAAGCACGATTCTCTTTTTTTCCTATTCCAGCACAGTGAATGTAACTAGATTCAAAAATCAGTTTAACTTTTTTTTCATTTTTAAGTGGAAATTTGATTTTTTTTTAAACTGCTTGCATAATGTGATTGTCTGAAAACTTTCTGTTTACTTGGACTCCTTTTTCAAGCAGTGTTGCTACACTTCTTACTGAGAACTGAAGTAGAATAAAGCCGACCACCTAAAGATTTTTTTTTACAGGCATTTGATATCAGTGTCAATGTGAAGACAGATGAAAACCTTGTTTTTCAAATCAGCTGTTTCTGTGAATCTTCCTACTTCCATTAGATCTGCTTTTTAAATTACATTTTTTTCATTTGGGACTGTGGCAATCTATGAATAGTTTGTTGAAAGGACTTCTGTATTCTCATGCCTAGCGTTCAGGGAATAAGCTATTTTAAGAATTCATGCTGCATATTTTACTTGGGCTGTTGTCAGTCAGATTTAAGCTCCTGAACTCACTGTGAGCCTCTATGGATCTGTAGCAGCTTGCTCTGAAAGATGTATTGAGAAATCCAAGGCATATGACAACGTAAATACTGCAGGAGAAGAGTGAAATCTGGTAAAGTATGAGCTTTGAAGGGCCAGTGATGTGTAATGTTCTAGTATGTGTGCCCTAGTATTCATTAAATTAACAGCTGTTACACACAAAGCTTCATTAAAAGCTTAATGAAGCTGTTCAGCCATATACGTTTACCAGGAATGGCAAGCTTTCTTTTTTGATTTGCCTAATGCATGCAGAAATAGAAAATGTCTTGCCATTTCACAGTGATTTTTTTTTTTAGTGATGGCAAAGCTCAGTTCTTTCTAGACATTTTAATGTGAAGGAATCTTCAAATGATCAATTTCTAACGAAATACTCCTGCTTAATGGCTTTGAAGAGTGGTTTAACTCAACACTTACTTATTTGACGGTTAAAGAAAAATGTAAACGCGGCAAATCTGGCATAGAAATAGCTACAGCAGACATGAAACTTCGTACTGCTTTTTTATTGTTATTTTTAAGAGTAGAACATGTAATAACTATTTTGTTTGCATCTTGCATTGTTTTCATAACGTCTTTTTTATATAATTTGTAACTTGCCTACAATAATCAGGAAAAGTATTGGTTAGCTCATGAGCAAATGTAATGTACCTTTGATCTTTCATCTACAATCCACATAATTAGGTAGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTCTTATAAAAGAGTTGAGGGAGAATTGTTTAGTTCGTAACTAATGTTTTTGGTGAACTGGAAGTGTTTCAACCTATTCACAAAGTAAAAATCTGAATGGTTTGAAACATGATTTTCCTCCTGTAATTTGAATATTCACCACAGAAAGATGCATAAACTCTGTGTGGTGGTATTCCAGTGGCTGGTTGTAACCATGCAATAGGGATCTACCTCTCACTCTCCCAACCCCTCAATGTTAAGAAGCAAGCAAGAAAAACAAAGCCAAGTATACACTGCGTGGAGACTTATCTCATTTTGTTTTTACTTGCAGAACTCTATGAAATATTCTTATCTAGAGCTAAGGAACGATGGAAAAGCTTCAGTGAAACAAGTTCTGAGAATGATGTAGAAGGTAAGACCTTCTGAATGCTAAACAGATTCCTATTTATTTTTACAAACACACAGTTTCACTAGTTTGTGTGCAATTGCAGCATTAGGAATGTTTGCTAAAATACTCTGGGTCGTTTCCTACTTGTTTTTGTGTCAGGCTGCATTCATTAAAAATTTAGATTAAATAAAAAGGAAGAGAACTCAAGGCCCAGTTGAAATTCTTCTGGAAGTTCTTGAGTGAATGCTGCCACCTTTGCTGTGATTTAAAGAATGCCAGCCCTGGGATACAGAAAACTTGAGTCATATGAAAGCTAACAAGGGCTCAGAAGGAATGTAACTTCTACAGCTCCTAACCAGTCAATTTTTGAAAACTTCAGTGAAATCTCTGTGCATTTTGTTACTCTTAGTGTTATATATATATTTAAAGAATAAAAACCATTTTTTTCCCTTATATCATAAAGACGTTATGCATGTGGCAGTTTTAATCGGAAGCCTGTAGAATTGTTTTATCACTTTCAATGACTTTTGGTTTTGCTTGCAGACGCTAGTGCATCTGTTGCTGATCGTGAGGCCAGCCTGGAGCTAATTAAGTTGGATATATCACGCACATTTCCATCCCTGTATATTTTCCAGAAGGTGAGAGTTATGTAACTTTACCTATAACTTTAAACATCTGAGTAGTTAAACAAGAAGAGGAACCTAGCTAGCAAGTATGGAAAAGTTTTCAGAAGCTTTTGGTGTAAAACAAGAGAAGTAAAATTACTTGGTCCTTTTCTACATACAACAGCAAGGAGTCATGCCCTTTCTGATTAGATTAAACTAGGATGCTTACTGTGTTAAAGTGGTTTTGTAAGTGCTTGTAAGTGAAGGATTAATAAGGCTTTTTCTCCAGGGAAAATTGTATGCAGTTCCTATTACTGTTTAATGAAATTNNNNNNNNNNTGATCATTTCTAACAAAATACTCCTGCTTAATGGCTTTGAAGACCGTTTTAGCTCAACACTTACTTATTTGACTGTTAAAGAAAAATGTAAACGCGGCAAATCTGGCATAGAAATAGCTACAGCAGATATGAAACTTTGTACTGCTTTTTTATTGTTATTTTTCAGAGTAGAACATGTAATAACTATTTTGTTTGCATCTTGCATTGTTTTCGTAATGTCTTTTTTATATAATTTGTAACTTGCCTACAATAATCAGGAAAAGTATTGGTTAGCTCATGAGCAAATGTAATTTACCTTTGATCTTTCATCTACAATCCACATAATTAGGTAGCAACTGAATTACTTACCTAATCACTTATAACAGAATTTTTAATATGTTTTCTTTAACAG
Seq C2 exon
AAATTAAAGAAGCACATAAAAGGAAGAAAATAATGAGAGAGCGTTTCAAGCAAGAAGACAATATTGCTAGTGCTATGGTGATTTGGGTCAATGAAATACTACCTAACTGGGAAGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538:ENSGALT00000010562:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]