BtaINT0145402 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15828833-15831005:+
Coord C1 exon
chr26:15828833-15828915
Coord A exon
chr26:15828916-15830887
Coord C2 exon
chr26:15830888-15831005
Length
1972 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAA
5' ss Score
5.96
3' ss Seq
TTTTTACTTGTTTAAAACAGAAA
3' ss Score
6.41
Exon sequences
Seq C1 exon
AAATCTTCCTGCCAAATCTGTGGAAGAGGCTTTACGTCACCGACAAGAATATGATGAGATGGTGGCTGAAGCTAAAAAACGAG
Seq A exon
GTATAAAATTTAACTCCAGGTGATATATTTTATTTATTGATGTTAGTAGGAAACTCATTTCCTACTAAATTCATTTCAACAGGATGGCAAATGGTGAAATTGACCAAGTCTGTCTTTAAGATGATGCTGACTAAATTTGTTCTTAAAGAGAAATAAAATGTCGTACAAGAATCTTAGTTTTTAAATACTTTTACAAAACTAGTATGAGGAGAAAGGCCGCAGACTATCTATGAGAGACCTAGTAATTGCAACATAAACGTAGGACTCCTAGTACTTTAATTTATAAATGAAGATGTTATGCATGAATCCATTCAGGAGATTCATTTGTTTTTTCACTAGGCTTTTGATATTTTATAATTTAAGAATTTTGACATTTTGCAGTAACTTTCTATAGGTTATGGGAATATGATTTGGAAGTAAAAATTGATTTCATGACTTATGAAGTTTCTCTCAATTCCCAGTTGTGTCATTTTGACAGGCACAGAAGTGTAGATTCTTATGTGTATAAATTCACACATTTATTCAGTCTCTCTTCCAACCAAAAATAAAACATAAGGATGACTTAGCAATACTTACTTAAGTATTGTTAGTTCAGGGTACATTTTTAGAAAATATTACACAGTTATCTATATTTTTTAGCATAAGCTTTATTAACAACTGATATTTTTTCCTTTGACTTAAGTGAATCAAATGTTATTATAATATATACTTCTGCTTTCTGGCACAATCTTTTTAGAAGGCATAATTATGTAAACATTGGTTAAGTTTATTTTACTATACAATTTGAAATATTTCGAGCATACCCAACAAATTTTAATTGACTCTTAACATTGACATTACTATTTGATTAATATTTAAGATGATTATTGATAAATTAGATGAACCTAACAGTATATGATAAAAGTAACATTGAATTGGGAAGTAAGAAGGTCAAAGCTTTAATCTTATTTTATGCTTCCTGGATGTGATACTCTAAATAAATCTTAATTTTCCTCATCTGTGAAATGTTTGTGTGTGTTGGGGATGAAGAGTGGAGGAGGGGGCAGTTGACTGCATCTGGGCTTTTCAAGCCCTTCAGTCAACACTTAAAATCTGAATACGTAAATAAAAGAATATGGAGTTATTTACTTGCCCCCTTAAGATGGTTTGTGAGTCACATGTGAAACATAATTAGAAAACAGTTTAGCCAGGTAATCTCTGAAGTCCCACTGGTTCTAAAATTCATTCATTCTCTGTGTATGTACTTCTCTATTTGGGGGGCATCTCTTATTCCAAAATTGTGACTCCTGATCGTCAGAATGGTGTTAGTTGTATGTGTGTGTGTTAGGAGGATTTTAAAATTTCCAGGTAATTAGTAAACTGAAACATCATAGTAAAAGAAAGGGTCACTGTAATAGTGCCATGGCAATATCATTTTTCAATGTCATGTGGGTTTTTGTTTTTGTTTTCTGTGCCACATGGCATGTGAGATCTCAGTTCCCCGACTGGGAATCAAACCCATACCTTGTGCATAGTGAAGCTCAGAGTCTTAACCTCTGGACCACCAGGGAAGTCCCTGTCATGTGGTTTTATGTCAAGAAATTCATAAACCCATTGTATGAAAAAATGGTATTGGTTAGTTGCTCACAGTTGTTTATTTTTACATAATTAATTCATGAGAAATTTTACTTCATTAAGTATAAGTAGACTGTGATATAGTAATCTCTGAGCTTTGTTCCATCCATTTTTGTAGAACAGAAGAAGCTACTTTTATGTTAATCAAGTTCATTTTTTCCTCTTTTTCCCTCTTTCTCTCCTTTCCTCTTTCTCCTTTTTCCTTTCTTCCCCTTCTTCCCTTCTTCATTTCCATTCTTCCTTCCTTTTACCAGAATATTCTTTATGAGAAAGTCTCTTTTGTAGACTTGGGTAGAAAGAGAAGGGCATTTTGATCTGGCTGTTTTATATTGAAATAATTTTTACTTGTTTAAAACAG
Seq C2 exon
AAATTAAAGAAGCACATAAAAGGAAAAAAATAATGAAAGAACGGTTTAAACAGGAAGAAAGCATTGCAAGTGCAATGGTAATTTGGATCAATGAAATACTACCCAATTGGGAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693:ENSBTAT00000012783:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGCCAAATCTGTGGA
R:
CCAATTGGGTAGTATTTCATTGATCC
Band lengths:
190-2162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]