HsaINT0163980 @ hg19
Intron Retention
Gene
ENSG00000108239 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:29082]
Coordinates
chr10:96253122-96256929:+
Coord C1 exon
chr10:96253122-96253204
Coord A exon
chr10:96253205-96256811
Coord C2 exon
chr10:96256812-96256929
Length
3607 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAA
5' ss Score
5.96
3' ss Seq
TTTTTACTCGTTTAAAACAGAAA
3' ss Score
6.27
Exon sequences
Seq C1 exon
AAATCTTCCTGCCAAATCTGTGGAAGAAGCTTTACGTCACCGACAAGAATACGATGAGATGGTGGCTGAGGCTAAAAAACGAG
Seq A exon
GTATAAAATTTAACTCCAAATGGTATAATTTTCTGATTTTAATAAGAAGATGGATGGTAAAATTCATCAAGTCTGTCTTCAAGATGATACTGAATTCTTTTTTTTATTTCTTTTTTCGTTTCTTTTTTGAGTCTTGCTCTGTTGCCCAGCCTGGTATGCAGTGATGCAGTCACAGCTCACTGTAGCCTGACCTTCCAGGCTCAAGCAGTCCTTTTACCTCTCAGCCTCCCAAGTAGCTGGGACCACAGGCACGTGCCACCATGCTTGGCTAGTTTTTTGTATTGTTTGTAGAGATGAGGTTTTACCATGTTGCCCATGCTTTTATTTTTCTCTACTATTTTTATAATTAAGTTTGTTCTAAAGGAGGAATAAAATGACATACCAGGATCATAGTTTTTCTGCATGTACTTTTACAGAATAGGAGGAATCTTGAAATTACAGTCATAAAACTTGGACTTCTACTATCTTAGTTTATAAATAAAGATAATAATTCATGAATCTATTAATGAATTTCACTTTTTACCATTTTTATATTTTATAATTAATTTCTAATTATTTTATAATTTAATAATTTTAACTTTCTATATGGCTGTGAGAATATGATTTGAAACTCAAAATTTTTTTGTGACTTACAGAGTCTCTCTAGAGGCCCAATTGTGTCATTTGGTTAGGTGCATAAAAGTATACTCTTGTGTGTATAAATTTACGTATTCATTCATTCTCTTTTCCAACCAAAAAAATAATATCAGGATAATTTAATGGTGTTTATTTCCTGACAGTTGTTATTTCAGGATAAACATACATTTTTAGAAGATATTACACAGCTGTATACATTTTTAGACTTAACATCTAACACCTTATTAACAACTGATATTTTTTCCTTTGACTTAAGTTAATGGACTGTTATAATAGTATACAGTTCTGCTTTATGGTGCTATTTTGGAATTGAAGTTACTTCTTTAATGTTAAGTAAACATAGGATATATAAGGCTAGTTATATTGTTCTAGAAGGTATTTAAACATTAGTTGAGTGTATTTTACTATACAGAATTCGAAATATTTCTGACATATCCAATTAAGTATTTATCTATTTATTACTTATTTTTATTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTAGAGTGCAGTGATGCGAACTTGGCTCACTGCAGCCTCAATCTCCCAGGCTCAGGAGATCCTCTCACCTCAGCCTCCCAAGTAGCTGGGACCATAGGCGTGCACCACCACGCCCAGTTAATTTTTGTATTTTTTTGTGGAGACAGGTTTCGCCATATAGGCCAGGCTAGTCTTAAACTCCTGACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTTCAGGTGTGAGCCACCACATCCAGCCTAAGTTTTTATTTTTTATTATGTATTTATTTATTTTAGAGACGGGGTCGCACTTGTTACCTAGGCCAGAGTGCAGTGGTACAATTATAGCTCACTGCAGCCTCGAATTCCTGGGCTCAAGCAATCCTCCTGCCTCAGCTTCCCTGGTAGCTGGGATTGCAGGTGCATGCCACCACACCCAGCTCTTTTTTTTTTTTTTGAGACAAAATCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGTGACCTCCGCTGCCTGGGTTCAAGTGATTCTCCTACCTCAGCCTCCAGAGTGGCGGGGATTATAGGTGCCCGCCACCAGGCCCAGCTAATTTTTGTATTTTTAATGGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCTTGACCTCAAGTGATCCACCTGCCTTGGCCACCCAAAGTGCTGGAATTACAGGCGTGAGCCACCATGCCCAGCCCCAGCTCATTTTTTAGAAGTTATTTTGTAGAGATGATGTATCTCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAGCAATTCTCCCACCTGGGCCTCCCAAGAGCGTTGAGATTATAGGCATGAACCACTGTGCCTGGCTCCAGTTAAGTTTTTATTAATTTTAAAATTTTTACTATATGATTACTATGTAAGATAACTATTGGTACTGGATGATCTTAAAAGCATGGTATGATAGGGATAATATTGAACTGAGGAATCAGAAGGCCACAGCTTTAACCTTGTTTGATACTACCTTGGTGTGATACTCTGAACAGGCCTGATGTTAGTTTTCTCATGCGTAACATGTGAGAGGCAGGTCAGCTTAATCAGGGCTTTGAAGCTTCTCTTTCATCATTTTTTTTTTGTTGTTGGTAAAGCAGTGGAACATTCTCCCAAGAAATCTTATATAGAATATGAATACATAAAACAAATAAAAGAAAGTAGAGATTGTCGGCCAGATGCGGTAGCTCACGCCTATAACCCCAGCACTTTGGGAGGCTAAGGCAGGCAGATCGTGAGGTCAGGTGTTTGAGACCAGCCTGGCCAGCATGGTGAATCTCTGTCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGTGGTGTGACCCTGTAATGCCAGCTACTGGAGAGGCTGAGGCAGGAGAATTGCTTGATCCCGGGAGGTAGAGGTTGCAGTGAGCAGAGATCGCACCACTGCACTGCAGCCTGGGCAACAGAGCGAGACTCTGTTTCAAAAAAAGAAGAAAGAAAGTAGAGATTGTTTACTTGGCCTTCTGCTTGCCCCTCAAGATGGTCTGAGGCATATCTGAAAAAACAATTTGAAAACAGTTTGGCTAGCTGGTCTCTGACATCCTCACTGGTTCTAAAATTACATAAAGTTTTGATTTATGACTCACTTTCGTCTGTATTTGAGACATCTCTTCTTCTGAAATTGTCACCTTTGATTTTCAGAGAGATATTTTCTTCCTCTAACTTTTGCCTCAGAATCTAAGAGATGTACTGTTAATATATGTGTTTTGGGGGACATTTTAAAATTTCAAACTAGTAAAGTGAAACACCATATTAAAAAGAGTTAATATACTAATAATGCTACTGACAAAATCATTTTGGAATGTCATGTGAGTTATGTCAGAAAATTTATAAACCCTTGTAGGAAAAATGGGTATTGGTTAGTTGCCCACAGTTGTTTGTTTTTTATATAGTTAATTCATAAGAAATTTGACTTCATAGATTTAGTGTAAATAGAAATATGTGATAAAGTAATCTACTTAAATTATTTTTCTGACCTTTTATTCCACTTACTTTTATAGTAGAACAGGAGATGTTATTTTAAAATTATGTTAATAACTGGGCATGGTGGCACACATGTGTAGTCCAAGCTGTTCAGGAAGTTGAGATATGAGGATTTATTTAAGTCCAGGAGTTCAAGGCCACCTGAGCAACGTGGCGAGACCCATCTCTAAAAAAAGAGAAAACAAAGAATAGAAAATTATGTTAATCAAGTTCATTTACTTTCACTTTTTCCCTCCCTTTCTTTCCCTGTCCCTCCCTCCCTTATTTCCTTCCTTCCTCTTATGATAATATTCTTTTTGAGAAAGTCTATTTTGTAGAGTTTAGGTAAATGGAGAAAAGGATTTTGATCTAGCTTATTTGTATTGAAATAATTTTTACTCGTTTAAAACAG
Seq C2 exon
AAATTAAGGAAGCACATAAAAGAAAAAGAATCATGAAAGAACGATTTAAGCAGGAAGAAAATATTGCAAGTGCAATGGTAATTTGGATCAATGAAATACTGCCCAATTGGGAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108239-TBC1D12:NM_015188:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)