RnoINT0147944 @ rn6
Intron Retention
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79409630-79412344:+
Coord C1 exon
chr14:79409630-79409712
Coord A exon
chr14:79409713-79412226
Coord C2 exon
chr14:79412227-79412344
Length
2514 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
ATTTTAATCACGATTTATAGAGC
3' ss Score
2.99
Exon sequences
Seq C1 exon
GAATCTCCCAGCAAAGCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGGTGCAGGCTAAGAAACGAG
Seq A exon
GTACTGTGACAGCCAGCCAGCTCTGTTCTCTTCTACTCTGTTTAAGTTCGTTAGCTTTAACCTTGACAAAGGCAAATTCATACTTTGAAATAAATGACTTTTCCATTAAACAGACAAAAAAAAGGATACGTTGCCACTCCTGGGAGCTTAATAATCTTACATGAGAGCAAGGTGTGGTAGGCACACCTATTAACCCAGCACTTGGGAAGCTGAGGCAGGAGAATCATGAGTTCAAAGCCAGTCTTTACTATATAACAAGACCCCTTGACATAGATTTACATGAGAAGAGACTAGGGTAAGAGGTGTGTGCTAGAAAGAATTGCAGCTAACAGTGACATGCCGCTCTTTCCCTCCTTGACTCTTCTCTTCATAAGATGTGAGGGGTTAGATAAGTTCTTTGCAGCATTTAAAAAGCTAGATGGTGCTGTGATTCTGGAGTGTTTTAAAGTACAATAAATAAATGGAATATCATTCACCCTTTAAGAAGGAAAGTCTAACACAGTACAAAATGGTTGAACGTGATCAATCCAAAGTGAAACAAGCCTGTGACTAAGTGACAGGTAGTACGATGTCATTTCTCTGGGTGCCATGAGGTAGTGTGCTGAGAGTCTTTTCAGCAGAGGGCTACCTAAGGAGGGGCAGACAGGGAGTTAGTGGTTTAGTCAAAGAGTTAGACAAGTTTAGTCAAGGAGAAGATGAGAAGGTTCTAGATATGATAGTGATGGGAGTGTATCACAGTAAGAATAAATGTTATGAAGTTATACAGTTAGAGGTTAAAATAGTAAATTCTGTGTTATGTCTCTCCATAATAAAAAACTAACTGTTCCCAAGTATCCAGAGTGAATGGGTTGCAGAACCTTTTGCTGTTCCAGCATCTAAAGATGCTCACAATATGATCTGTCCTTTAGTCACTGGCATGTTTATAAAACGGCACTATTCTATGTGCATATAAGCTGTGAACGCCATCCTGTACTTCAGGTCATCTGTAGACCCACAATAGTTTTACACCATGTACATACTTATCAGAGGATTGCTCAGGGAACAATGACAAGAAGACAGTTTACACATGTTTGGTACAGACATGATTTGGTTAGCTGAGAGAGCCCAGGAATGCAGAGGTTACCGTGGTATAAACTAAGCAGATGTGCTTAGTTTTCCTCGGCCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGGTAAATGAAGAGTAAACACAAGGGGCTGGGGCACTTGTTGCTCTTGTAGGGGACACAATCTCGGTTCCCAACACACACTTGATAACTCATAATCATCTGTAATTCTAGTTCCTGGGTTTGTTTGAGGCCTTCTTTAAACCCCTGAGGGTACCAGGCATGTACAGGATACACAAATATACATGCAGGCAAGATACTGTACACATAAAGTTAGAAAAAAGAGCATTGCATAGGATGTTGAGAGTGAGCTCAGGGGTTGAATTCAGAAAGAGTGGGGTGGGGAATGGAATGGAATGGGCTTTCAGTGTTCTTGTGTATTCTGTTGGTTTGATTGGATGCTTTCATAGGCTTTGTGTGTTGTATTCATTGAATTATATTTGTGCTTGTACACTGTTTTAAAGGAGCAAGCTAGGGTTGGAGAGATGGCTCAGTGGTTAAGAGCACTGATTGCCCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCGCATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGCATGAAGACAGCGACAGTGTGCTCACATAAAATAAATAGAATCTTAAAAAAAAAAAAAAAAGCAAGCTATACTTAAAGCATTTACTGAAGGATGGATAGAATGTTCTGTAGTCTATGAGGAGTAGGCTATCATAGCTTAAACCTGTAATCTCTGCACTCTGGAGAAAGGAAAATACTGAGTTTGAGGCCAAACTGGACTACATAGCAAGACCCCGAGTTCACATAGTAAACCCATAGGTTTTGAAGTGAGTATCAAGAGTAGACATTTGCTGTGTACCCACACCACCAGTCTGTCTCTGTCTGTCCCTCTGTCTCTCTCCCTCCTCCCAGCCCCCCACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACTCTCGAAAACATGCGCCCAAGCCAGAGGGGGCATCTATCAGGTGTCCTGTTGTCCATCTTACTCTTTGAGGCAAGATCTCTTGCTGACTTCAAAGCTTATGTTTTTTACTGGACTGGCAGCCAGCAATCCTCCTGTCCACTCTCCCCAGTGTTGGGGTTACAGGCATGCAGTCATACTTAGCCTTTATGTGGGTGCTGCGATCTGAACCCCAGGCTCATGCTTTTGCAGCAAACACTTGACTACTAAGTCACATCTCCAACTCCTCCCTCACTGTTAGTTTTCTGGCATGGTGAACCTGGCATTCTGCTCAGTGTTTTCTTTATTTTAATCACGATTTATAG
Seq C2 exon
AGCTTAAAGAAGCCCAGCGGCGGAAGAAACAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGAAACGCCGTCCTCACCTGGAATAATGAGATCTTGCCTAACTGGGAAACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400:ENSRNOT00000058414:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=NA C2=0.275
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]