DreINT0160569 @ danRer10
Intron Retention
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39422214-39422776:+
Coord C1 exon
chr7:39422214-39422296
Coord A exon
chr7:39422297-39422658
Coord C2 exon
chr7:39422659-39422776
Length
362 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
GCACTTGTGATTCTGTCCAGAGC
3' ss Score
5.4
Exon sequences
Seq C1 exon
GAATCTTCCTGCAAAACCTGAGGAAGAAGCCCAAAAACACAGACAACAATATGAGGAAATGGTGGCTCAAGCCAAGAAAAGAG
Seq A exon
GTAACTTGCTTGATGTGCTTTTGCTATTCTGCGCGTGTTTGAGCTGAAGATCTACAGTTTAAGCAGCATCACAGTAACATTTGGGCTCAGTCTATATATATATAAATATATATATAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTAATGCCATTCATTTAAATAGATTTGACTGATCCTTTTTTCATTGTGTGCCTAAAATTTGTGCTCTAGAGGGCGCTGTTGTAAAAGCTTCAATGTAATCCTTTTAACAGAGATTTCCATTTCACTGCTATTCTGCCTCTCACTCTGTGCACTTGTGATTCTGTCCAG
Seq C2 exon
AGCTGAAAGATGCCCAGAAACGAAAGAAACAGCTGGAGGACCGGTGTAAACTAGAGGAAAGCATTGGCAATGCTGCTCTCACCTGGAGTCAGGAGATATTACCCAACTGGCAAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520:ENSDART00000133420:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(14.7=100)
A:
NA
C2:
PF085986=Sds3=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGCAAAACCTGAGGA
R:
ATGCTTTGCCAGTTGGGTAAT
Band lengths:
198-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]