Special

MmuINT0157278 @ mm10

Intron Retention

Gene
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36520444-36523009:-
Coord C1 exon
chr5:36522927-36523009
Coord A exon
chr5:36520562-36522926
Coord C2 exon
chr5:36520444-36520561
Length
2365 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CTTTTAATCACAATTTACAGAGC
3' ss Score
5.78
Exon sequences
Seq C1 exon
AAATCTCCCAGCCAAGCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGCTGCAGGCCAAGAAACGAG
Seq A exon
GTACTGTGGCAGCCAGCCAGCTCTGGTCGCCTCTACTCTGCTAAAGTTCATTAGCTTTAACCTTGCAAAGGCATTCATACTTTAGAATATATGACTTTTCCACTAAACAGACAAGAAAGGATGTGTCTCATTATTCCTGGAAGCATAATGACCCTACATAAGAAGAGCGAGCTGTAGTAGCACACACCTGCTAACTTAGCACTTGGGAAGCTGAGGCAGGAGACTCAGGAGTTCAAAGCCAGTCTTTACTATATAACAAGATGCTGTGACAGAGAACATAGATTTACATGAGAAAAGATGTGTGTGTTAGAAAGAGTGGCAGCTGAGCCTGTGTGGTGTGGCGCACGCCTTTAATCCCAGCACGCGGGAGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGATACACAGAAAAACCCTGTCTCGAAACAAACAAACAAACAAACAAACAACAAAAAACAACAAAAAAAGAAAGAGTGGCAGCCAATAGTGACATGCAGCTCTTTCCCCTCCTTGGCTCTTTCTCCCCTTCTTAAGATGTGAGGGATTAGATATGTTCTATGCAGCGTTTAAAAAGCTAGAGAGTGCTGTGACGCTGGAGTGTTTTAAAGTAAATACAGTAAGTACATGGAATATCATTCACCCTGTAAGAAGGAAATTCTGACACATTACAAAATTGTTGAACCTGATTGGTCCAAAGTGAAACAAGCCAGTAACTAAATGACAGACAGTATGATGTCATTTCTTTGGGGTGTGAGAGTCTTTTCAGCAGAGGACTACCTGAGGAGGGGCAGACAGGGAGTTAGTGGTTAATGAGGACCAGTTTAGTCAAGGAAAAGACAAGGAGGTTCGAGATAGGATAGTGGTGGGAGTGTATCACAGTAAGAATAAATGTTACAAGGTTATACAGTGAAAATGGTTAAAATAGTAAACTCTGTGTTATGTCTCTCCATTAAAAAAAACTATACCTGTTCCCAAGGATTCATGAGTAGATGGTTCCAGAAGCTCTTGCTGCTCCAGGATCTAAAGAGGCCCAAGGCTTGTGTATAAAATTGTTTACTCAGTATGCATATAAGCTATGTACACCGTCCTGTACTCAGGTCATCTCTGGATTACCCACAGTAGTTATGTGCCACATAGACACTTAACAGAGGATTGCTCAGGGAAGAATGGCATGAAAACAGTGTGTACATGTTTGGTACAGACGTGATTTGGTTGGCTGAGAGAGCCCACGGATGTAGACTTACCGTGGAGTAAACTGAGGGAAAGATGTGCTTAGTCTGCCTCAGCACTGCTGCTGGTAAATGAAGAGTGAAGCATATGGGGCTGGAGCCGTGGCTGGGTGCCGGAAAGCACTTGTTCTTGCAGGGGACCCGAGCTCGGTTCCCAACACACACTTGATAACTCACAACCCTCTTTAATTCAGTTCCAGGGGTTTGTTGATGCCTTCTTTAGACCTCTGAGGGTATCAGGCATGTACATGATACACAAGTATACATGCAGGTAAAATACTGTACACATAAAATTAAAGAGTACTGCACAAGATGTTAGGAGTGCATTCAGGGTTACATTAGGAAGAGTGGGATAGAGAATACATTGGGCTTTCAGTGTTCTGTGATGAATTCTGTTGGTTTGGTTGGATACTTTCATAGGCTTTGTTTGGTGTGTTGTATTCATTGAATTATATTTGTGATTTTATACTGTTTTAAAAGAGCAAGCTATACTTAAAGCTTTTACTGAAGGGTGGATAGAATGTTCTGTAGTCTATGAGGAGTAGGGTGTGATGCATATACCTGTAGTCTCAGCACTCTGGGGTAAGAGGAAAATACTAAGTTTGAGGCCAAACTGAACTACATAGCAAGACCCCAAGTTCCCACAGTAAATCCATAGGTTATGAAGTGAGTGTCAAGAGCAGACATTTGCTGCCTACTCACACCATCCATCTGTCTCTATCTATCACTCTCCCTCTCTCCCTGCTCCCAACCCCCTGTGTATGTGTACTCTCACAAACATGCACTCAGGCTAGAGGGGGCATCCATCAGGTGTCCTGTCGCTGTCCATCTTACTCTTGCTGACCTTGAACCTGGTGGATTTTGCTGGACTGGCAGTCCGCAATCCTCCTGTCTACCCTGCTCAGTGTTGGGGGCTTACAGGCAAGCACTCATACTCAGCCTTTACGGGGGTGCTGAGATCTGAACCCCAGCCCCATGCTTTTGCAGCAAACACTCAACTACTAAGTCCCATCTCCAACTCGTCCTTCTCTGCTATTTTTCTGGCATGGTGAGTACTGGCTGCTCAGCGTTTTCTTTCTTTTAATCACAATTTACAG
Seq C2 exon
AGCTTAAAGAAGCCCAGCGTCGGAGGAAGCAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGGAACGCTGTCCTCACCTGGAACAATGAGATCTTGCCTAACTGGGAAACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192:ENSMUST00000146430:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.716 A=NA C2=0.188
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types