GgaINT0069292 @ galGal3
Intron Retention
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82876096-82877885:+
Coord C1 exon
chr4:82876096-82876178
Coord A exon
chr4:82876179-82877767
Coord C2 exon
chr4:82877768-82877885
Length
1589 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
AAAAAATTGCTTTCCTGCAGAGC
3' ss Score
8.49
Exon sequences
Seq C1 exon
GAACCTCCCAGCAAAACCAGCAGAAGAAGCTCAGAAACACAGACAGCAGTACGAAGAAATGGTGGTTCAAGCAAAAAAAAGAG
Seq A exon
GTGATGGAGTTTCTTTTCTTCAGAAGAAAGCAGTAAAGTTAATGGCTATGTCTGAACCTGAGGTATACTTGTGTCATTCAGTTTTTCTGTGTCATGAGGGATTTGTACTTCCCTTCAAAGAAGGATCAATCCAGAAAAGAGAGAAAGACAAAAGTAGTTTCATTAAAAAGCCCCAAGAGTTCAGTTTTAAATAACTAAAAATATGTTAGAGTTTTATTTCAGGAACAATTTGTTGAGGCTGTCATACAGAAATACGTGTAGTTTCCATGCAGGAAGCGTAATAATTTTATTTGATAATCAGTCTCCCACTTAACATTTACATCTTTCCTCAGGTTTTGCTTCTCATTTCTTGTCTGGCTTCACAGCAGTGTCTCAGTAGCACTGTATTGTGCACATCAGGTGGAGCTGATAGCAGTGGTTTCTTCCAGATTATTTTGTACTGTCTCAGCCTTCTAATAAAACCAAACATTGCAGTAATAGGAAATCTGGACACATGGAACTTGTGTGTACAAGGAGAGCTTCTGGAAATATTGTTTTTCCAGCTGGTCTGAGCTATATGAAACAGTGGGAAAGTGGTACGAACTCAGGGCTTTTCCTTGCTTTCTACAGTTGTCATTTTAATTAACATATTGTGTTGTGGTTTTGGTGGGAAAGTTCATCCTACCTTTTCTTGTGGCCTCCGTGTCACTGTGTCCATGTAGCAGGTAGTGCTCCAGAGGAGATTCTCCTTTCCTTCTGTGCACGTACAGTTGGTGATTTGGAAGAAATGGAGTAATGCTCAGGTTAGGCAGTGGGCCAAGCCTTTGTGCTGTCTTTGCTAGATGAGGGTTTGTCATTCCATCAGATAAGTACCTCCGGAAAAAAAAAAAAACAACAAAAAACATTTTGCCTACAATCTCTGCAGATGAACGACTTGGCAGAGTGTTGTGTTGTGTAGGGGTCAGGAAATCAAAGTGTGTAAGCGCTGTTTTTGTTCAGAGAAAAATGCAAGTTTGTGTTTAAGACAGACTTACAAAGAGGTCGTATCAAAGCCGGAGGTACTCGGAGGCAGATGGTGTGGTTCAGCCATAGCTTCTGTTATGCTTTGAAGTGAACCCAACAAGTGGTGTGTGTTCATTCCAGAGAGCGTGGTATGTGGCATCCTACAATTAGTTTTCCTTGCCGATCAGTACTTGCCCATACTATAGATTGTGTGTGCTCACACACACACGCAGGTTCTGTATTTCCACTGTGAATCTGTAAGAAGTGTCTGCTGATGTTTGTTAAATCACATCTAACAAATTTGTCTGTGGAACAAACAGTAGTTGATGATGCAATAAAAGAAGCACTGCATGGTAATGCAAAGATGTAAAATACATGTAAACTGAATGTGAAAAATGTAGGATTTTATTCTGGGAGTTTGCAGTTTGTAGATTTGTGATGTAGAACATTTAGAACAACCACACATTAAGATTTTAGAAATGGAATTGTCTGCTGGAAATGTAGGTGTATATAAGGTGATTTTACATGACTATGTAGTCACGCATAGCTAACTTTCATTTTTCTTTCCTGGTTTTATTAAACTAAAAAAAAAAATTGCTTTCCTGCAG
Seq C2 exon
AGCTTAAAGAAGCCCAGAAGAGAAAGAAGCAACTGGAGGAACGTTGTAAGCTGGAAGATAGCATTGGCAATGCTGTTTTAACTTGGAACAATGAAATCTTGCCCAATTGGGAAACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546:ENSGALT00000025058:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(29.2=100)
A:
NA
C2:
PF085986=Sds3=PD(35.4=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTCCCAGCAAAACCAGC
R:
ATTGGGCAAGATTTCATTGTTCCA
Band lengths:
190-1779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]