DreINT0161340 @ danRer10
Intron Retention
Gene
ENSDARG00000016835 | tcirg1a
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
Coordinates
chr1:44183299-44183710:-
Coord C1 exon
chr1:44183497-44183710
Coord A exon
chr1:44183407-44183496
Coord C2 exon
chr1:44183299-44183406
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATACATCTCACTTTCTTTAGATG
3' ss Score
7.22
Exon sequences
Seq C1 exon
GTACTTTGGGAACGTGAGCAGTGTGTTCCTGGTGTTGATTCCTGAGTTAGTGTTCATGTTGTGTCTTTTCGGGTACCTGGTCTTCATGGTGGTGTTTAAATGGATTGCGTTTGGACCTCAGGATTCAGACCGTGCTCCCAGCATACTGATCCACTTCATTGACATGTTCCTGTTCTCCGAGAATCCAAGCAACCCACCACTTTATCCTAGACAG
Seq A exon
GTAAGAGAACCAGTCACATACTGATTAGTTTTCAACATAGTTTAGTCATACTTTTACTGCCACGACTAATATACATCTCACTTTCTTTAG
Seq C2 exon
ATGACAGTGCAGAGGATATTAGTGTGTTTGGCTCTACTAGCGGTTCCAGTGCTGTTACTGGGAAAACCACTTCAGCTCTACTTCCAGCATAGGAACAGCAGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016835:ENSDART00000145354:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.0=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTGCGTTTGGACCTCAG
R:
ACAGCACTGGAACCGCTAGTA
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]