DreINT0161371 @ danRer10
Intron Retention
Gene
ENSDARG00000105142 | tcirg1b
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3b [Source:ZFIN;Acc:ZDB-GENE-040426-2022]
Coordinates
chr14:16493723-16496204:-
Coord C1 exon
chr14:16495992-16496204
Coord A exon
chr14:16493874-16495991
Coord C2 exon
chr14:16493723-16493873
Length
2118 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
ACCTTGACTGTCTCTCTCAGAGA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GTGATGGGTGAGACGGAGCAGTATATGCAGCAGTTGCTGGTTCGTGCGCTGGCTCGTCTGCCGGAGTGGGTTGTGCAAGTTCAGAAGTGCAAAGCTGTGCAGACGGTGCTGAATCTCTGCAGCCCGTCCGTCACTGATAAATGTCTGATCGCAGAAGCCTGGTGTCCCGTCAGTCAGCTGCCCGCCCTGCAGAGTGCCCTGAGAGAGGGAGGG
Seq A exon
GTGAGATAACACTTCCACAACACAAGATTATGGTTTTAGCCACATATTGAGTGCCTAAACTACCCTTAGTTGGGTAAACTTCTATTAGGTATGTGAAATATAAATATAAATATATAGAAAATCTATTGTAGTATTTCTAATTTTATTTTCCACCAGAAGGTGTAATGTAAAGAGATTTAATGTTATTTATAGAGAGAAAAATGTCAAGTTTGCAGACACAGTAGCATTAACTTTTTTTTTTTGTTTTTGGAATTTAATGTAGTGGAGTAAAAATAAAAAAAATTTAAAAGGCTTTACATCTTATATTTTAATAAATTATGAAAGGTGTCTATAAAAGTGTTTTTAATATTATTTTTTGTTTAACCTTTCCTCAAGTAACATTGTCTGCTAACATTTTCAAGTGGTAAGGGCCCTATGAAAACCTGTTTTTCTGTTTTGTGACGTTTTTGCTATTGTAATTTTTTAGGAACTCTATTTTTTAAATTATTATATTTTATTTAACCATTTGCAGCGACGCTGTGGCGCAGTAGGTAGTGCTGTGGGCTGGGTCAGTTGGCTTTCTGTGTGGGGTTTGCATGTTCTCCCTGTGTTTGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGACCAAAGACAAGCGGTATAGGTGAATTATGTAGGCTAAATTGTCCGTAGTGTATGAGTGTGAATGGATGTTTCCCACAGATGGGTTGCAGCTGGAAGAGCATCCGCTGTATAAAACATATGCTGGATAAGTTGGTGGTTCATTCTGTTGTGGCGACCACCTCTATACTTTTATTTATTTTTATTTATCTAAAAACAATTTTCTCTCCCGCCAAGAAATATTGTCTGTGCTGACATTGTTGTTAGGAGCCTATGAACGCCATTATTCTGTTTTGTGGTTAAATTACAATTTAATTAAGTCAGTAAGAAATATCATTTTTCAGGAACACTGTTTTTTTTTATTTAACAATTATATTTTTATTTAACGATTTACAAACGTGCATTCATGCATGGCTTCATACAGAATTATATGAACAAAATCTAAACATCTAGGAATACCAATCCAATCTCTCTAATAACTAAAATACAATCCAGCAATCTAAAAAATCAATTTGTGTTGGGACAACTTGAAGGAATTAAGTTAACTTAATTGTTTTAAGTTCAATCCACCTAAAATTGTAAAACTATTAAGTTGTCATAAAAAAATCAAGAATTGTGTTGTTTCGGCTCATTTTAAATATCATTTGCGTAAGTTTTTGAGTGTACACCTTTTTAAATTTAAAACACATAATGAAAGGCCTCCAGTCCGTCAATAGGCAAGGCAAGGCAAATTTCATACACATTTGTAAATTTAAAGTGCTTTACATAAACAGAGGCAAGTGTATAAGTAAATAAAAACGAATAATAACAGATAAAAAAACAAATAAACTAATAAAAAAACAGATTAAATGTGTTAAAACAGGTTATAAAAGAATGAAAAAAGAAAAGAAAGATATAATATTGTGATCTGTCGGACGTAGCACAGTGCTCATTCACTAAAAGCACAGCTAAACAGATGTGTTTTCAGTCTTGATTTGAAAGCACCTGCATATCTGATCATTTCTGGAAGCTGATTCCAGCAGTGAGGGGCGTAGTAGCTGAAGGCTGACTCACCCTGCTTTGACTGAACTCTTGGAATTTCTAGTTTAAATGATCCTAATGATCTGAGTGATCATTTCTGTAATGTATTGAGGTTCTAGGCCATTTAGTGATATATAGATAAGTAGTGATACTTTAAAATCTGTTCTGAATGTAACTGGGAGCCAGTGTAAAGATCTAAAGACAGGTGTGATGTGCTTTAATTTTCCTGGTTCTGGTCAAAATCCTGGCAGTAGCATTCTGAATGAGCTGAAACTGTCTGACTGTCTTATTGGGAAGGCCAGTAAGGAGTCTATTACAGTAATCCACCCTGCTGCTGATAAAAGCATGAACAAGCTTCCTCTAAGTCTTCACTGGAAACAAAGCATCTAATTCTTGCAATGTTTTTGAGAAGATAGTATGCTGATTTAGTTACTGCTTACATGACTACTGAAACTCAGATCTGATATCTAAACCTTGACTGTCTCTCTCAG
Seq C2 exon
AGAAAGAGTGGCAGTAATGTGGACTCTTTCTACAATCGGTTGCCAGCCACTACATCTCCCCCCACCCTCTTCCCAACCAACTCCTTCACCGCAGGATTCCAGAGCATAGTCGATGCTTATGGAGTGGCCAGCTATAGGGAGGTTAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105142:ENSDART00000170758:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.1=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]