RnoINT0148879 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219134298-219134955:-
Coord C1 exon
chr1:219134743-219134955
Coord A exon
chr1:219134443-219134742
Coord C2 exon
chr1:219134298-219134442
Length
300 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TCTCTGCCTCGGTACCCCAGAGT
3' ss Score
5.84
Exon sequences
Seq C1 exon
GTCCTGGGGGAGACAGAACGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCAGGGCAGGTGCAGATCCGGAAGATGAAGGCCGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATTGCGGAGGTCTGGTGTGCCACGAGGGACCTTCCCACTGTACAGCAGGCGCTGCAGAGCGGCTCG
Seq A exon
GTGAGCATCCGGGCTTTGTTCCCTCCCTGCCTTAACTCATTCTGCTTCCAGTCTCTCCTCAAGCTTCTAGAACCTTACCTTTGCTCTGGGATTGAAGGATGGGTACAGATTCCTTGGAGCCTCCTCCTCCAGGGCATCTTGAATAGGGTGGGGCTGACCAACTTCCCCCATGCCATCCCACCCCACTCTCGACCCAGAAATTACCTTCTACAGTCCCCATCTCAGCTGGGCCTGAGAGGGAGGGGCAGGGTTTCTACAGGCCCTAGCATTAGCTTCTGTCTCTCTGCCTCGGTACCCCAG
Seq C2 exon
AGTGAGGAAGGAGTGAGTGCTGTGGCTCACCGTATCCCTTGCCAGGACATGCCTCCAACTCTCATCAGGACCAACCGCTTCACCTCCAGCTTCCAGGGCATTGTGGATGCCTATGGTGTGGGCCGATACAGGGAAGTCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(16.8=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACAGAACGGTTCCTGAGC
R:
GTTGACTTCCCTGTATCGGCC
Band lengths:
345-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]