HsaINT0165071 @ hg19
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:11647]
Coordinates
chr11:67811599-67812569:+
Coord C1 exon
chr11:67811599-67811811
Coord A exon
chr11:67811812-67812424
Coord C2 exon
chr11:67812425-67812569
Length
613 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
GTCTCTGCCCTGGCACCCAGATG
3' ss Score
6.69
Exon sequences
Seq C1 exon
GTCCTCGGGGAGACAGAGCGGTTCCTGAGCCAGGTGCTAGGCCGGGTGCTGCAGCTGCTGCCGCCAGGGCAGGTGCAGGTCCACAAGATGAAGGCCGTGTACCTGGCCCTGAACCAGTGCAGCGTGAGCACCACGCACAAGTGCCTCATTGCCGAGGCCTGGTGCTCTGTGCGAGACCTGCCCGCCCTGCAGGAGGCCCTGCGGGACAGCTCG
Seq A exon
GTGAGCAGCCTGAGGCCTCGCCCCCTCTCCGCCCGCCCCTCCTACCAGGCCGGGGCGTTTCTGCCTCACTTCCAGCCTCTGGCTCCCTGCACCTGGGCTTTGCCTAGGGGCTCCTTCTCCTCCCAGCCTCCTCCATGGCCCACCGCTTCCAGGGAGTCTGCCCTGATGGCCCTGGCCCAGCAAGCCCTACCCTGACTTTCCTAAGTCCCTGGAGGCTGCACAGGATAGTTTTAAAGTCAGAAGCCTCATTCCAATCCAGGCCCCCCTGTGACCTTAGGCCTGCTCATGGTCTGTGGAACCGGTGTGATGCCCCTGCCTCCGGGGGTCACCCGCCGCGCACAGCAGGTGCTTGCGGGTGAGGCTGGGCTCCTTCTCCTGGGCCGTCCCTAGGAGGCAGCATGCTTGCCTTTCCCAAGCAATTGCCAATCCATGTGGTGTCTTTGGGCCCCCACCAGGGCAGAGCAGGGCTGATCATCTCACGTCAGAGAGAGGGGAAGGGGCTGCCCAGTGAGCCCCCACAGGGCTCTACATCTCCAGCTGGGCCTGGCTGGAGATCCCAGGGTCCCTGAAGGCCCCCGCCACCGTTCTGGTCTGTCTCTGCCCTGGCACCCAG
Seq C2 exon
ATGGAGGAGGGAGTGAGTGCCGTGGCTCACCGCATCCCCTGCCGGGACATGCCCCCCACACTCATCCGCACCAACCGCTTCACGGCCAGCTTCCAGGGCATCGTGGATGCCTACGGCGTGGGCCGCTACCAGGAGGTCAACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-TCIRG1:NM_006019:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(15.5=95.6)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCGGGGAGACAGAGC
R:
CTCCTGGTAGCGGCCCAC
Band lengths:
348-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)