HsaINT0165071 @ hg38
Intron Retention
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68044132-68045102:+
Coord C1 exon
chr11:68044132-68044344
Coord A exon
chr11:68044345-68044957
Coord C2 exon
chr11:68044958-68045102
Length
613 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
GTCTCTGCCCTGGCACCCAGATG
3' ss Score
6.69
Exon sequences
Seq C1 exon
GTCCTCGGGGAGACAGAGCGGTTCCTGAGCCAGGTGCTAGGCCGGGTGCTGCAGCTGCTGCCGCCAGGGCAGGTGCAGGTCCACAAGATGAAGGCCGTGTACCTGGCCCTGAACCAGTGCAGCGTGAGCACCACGCACAAGTGCCTCATTGCCGAGGCCTGGTGCTCTGTGCGAGACCTGCCCGCCCTGCAGGAGGCCCTGCGGGACAGCTCG
Seq A exon
GTGAGCAGCCTGAGGCCTCGCCCCCTCTCCGCCCGCCCCTCCTACCAGGCCGGGGCGTTTCTGCCTCACTTCCAGCCTCTGGCTCCCTGCACCTGGGCTTTGCCTAGGGGCTCCTTCTCCTCCCAGCCTCCTCCATGGCCCACCGCTTCCAGGGAGTCTGCCCTGATGGCCCTGGCCCAGCAAGCCCTACCCTGACTTTCCTAAGTCCCTGGAGGCTGCACAGGATAGTTTTAAAGTCAGAAGCCTCATTCCAATCCAGGCCCCCCTGTGACCTTAGGCCTGCTCATGGTCTGTGGAACCGGTGTGATGCCCCTGCCTCCGGGGGTCACCCGCCGCGCACAGCAGGTGCTTGCGGGTGAGGCTGGGCTCCTTCTCCTGGGCCGTCCCTAGGAGGCAGCATGCTTGCCTTTCCCAAGCAATTGCCAATCCATGTGGTGTCTTTGGGCCCCCACCAGGGCAGAGCAGGGCTGATCATCTCACGTCAGAGAGAGGGGAAGGGGCTGCCCAGTGAGCCCCCACAGGGCTCTACATCTCCAGCTGGGCCTGGCTGGAGATCCCAGGGTCCCTGAAGGCCCCCGCCACCGTTCTGGTCTGTCTCTGCCCTGGCACCCAG
Seq C2 exon
ATGGAGGAGGGAGTGAGTGCCGTGGCTCACCGCATCCCCTGCCGGGACATGCCCCCCACACTCATCCGCACCAACCGCTTCACGGCCAGCTTCCAGGGCATCGTGGATGCCTACGGCGTGGGCCGCTACCAGGAGGTCAACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719:ENST00000265686:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(15.5=95.6)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(55.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCGGGGAGACAGAGC
R:
CTCCTGGTAGCGGCCCAC
Band lengths:
348-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains