BtaINT0050334 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54314129-54315296:+
Coord C1 exon
chr19:54314129-54314322
Coord A exon
chr19:54314323-54315103
Coord C2 exon
chr19:54315104-54315296
Length
781 bp
Sequences
Splice sites
5' ss Seq
GAGGTCGGG
5' ss Score
1.63
3' ss Seq
CCCAACCCTTGGCTCTGCAGGAT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTCCTCTACTCCCTGTTAAACCAAAGTGAAAACATGAGCGGCTGGCCCCGCGTGGTCTCGGAGGACATTGTGAAGCAAGTCCACAAGCTGAAGAACGAGATGTTTGTGATGAGCGGCAAGATCAAGGGGAAGACCCTGCTGCCCATCCCAGAGCACCTGGGCAGTCTGGACGGCACGCTGGAGTCCATGGAGAG
Seq A exon
GTCGGGGCCCGGCTGGGGAGCTGGAGGGAGGGGTGGTCCCTGAACCCCCAGGGCAAGCTCCCCACAAACTGGTCTTGGTGCTAGTGAAGCCCAGGAGGGCAGGACTGTACCTTTAGGTGCTGAGTCTGAGATGCGGCATTGGAGCCCCCCAGACTCCGCTGGGCAATGGCTGGACCCCCGTGCTCCAGCCCCCCTCCATCACACACGTGCACTAGACCCTGCATCACGTGGCATGCCAAGAGCATCACGTCATCTGGGGTCACACAGGAAGGGGGATCCCCAGCTTTAGGGTGTGGGCAGTGAGGGGCATGGAAGGGGTTTGCAGCAGGTGGAGGCTGCACTTCTGAATGGAGGCTGAGGCTGCCCAGAGACCCCCAGAAGCCCGAGGACCCCCAGGTGTCACCTTGCACCTGCCTGAGTGCCCTTTGCAATGGCATGGTGTGCACAGCTCTTGAAGCTGTGGCAGTGCCTGCCTGCTCCCTTACTCCCATCAGAGGGTGAGCACTCCTGCGGGGCTCATCACACAGGCGGGCCCTCTAGGCCCCCAACACTCACGCTGTGGTGACCCGATCAGAACTGCCCAGGAGCCATGGTGCAATATGGATTTTATTCCAGAGCTGGCTCCCCTCATCCTCTTTCTCGGGGGCACCAGTACCCCGGGCAAGACCCAGTGTTGTCTCAGGCTCTGTCCTGGATGAGGGCCGTTGGGGGTGGAGCTGGAAGAAGCCTGCGGGTGTAACTGAGAGCATCCCCCACCCGCCCCCAACCCTTGGCTCTGCAG
Seq C2 exon
GATCCCCTCCTCCCTGGACAACTCGCTGCTGCACGCCATTGAGACCATCATCATTGACTGGTCCCACCAGATCCGGGACGTGCTGAGCAAAGACTCGGCCCAGGCCCTGCTGGACGGGCTGCACCCCCTGCCCCGAGTCGAGTTTGAGTTCTGGGACGCCCGGCTGATGAACCTCAAGTACATCCACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(9.9=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAAAACATGAGCGGCTGG
R:
GTACTTGAGGTTCATCAGCCGG
Band lengths:
351-1132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development