HsaINT0049533 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76567672-76568976:-
Coord C1 exon
chr17:76568783-76568976
Coord A exon
chr17:76567865-76568782
Coord C2 exon
chr17:76567672-76567864
Length
918 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
CCCAACCTTCCACTGGGCAGGAT
3' ss Score
4.74
Exon sequences
Seq C1 exon
GTCCTCTCTTCTCTGTTAAACCAAAGTGAGAACATGGCTGGATGGCCCCAGGTGGTCTCGGAAGACATCGTGAAGCAGGTCCACAGGCTGAAGAATGAAATGTTTGTGATGAGTGGCAAGATCAAAGGCAAAACCTTGCTGCCTATTCCGGAGCACCTGGGCAGCCTGGATGGCACGCTGGAGTCCATGGAGAG
Seq A exon
GTGTGTGGGCCCAGCTGCTTCCGGCTGCCGCTGGGTGGGGAAGAGGCACATGCTTGACCCCCACCCCCCACCCCACTCCACCCCACTCCGACCCGTTGTTTCCCTGCAGAGTGGCTTCACATGTTAAAGCCGGGGAAATGCAGGGCAAGGTGGTGCGTTAGGTGGTGCTGAGACTGAGGAAGTTGAAACCAGGGCAGGGAGGGAGCAGGCTCTGCAGCCCCTGGGGCTCTGGCACCTGCACCCCACACCCCCCGCTGGGTCACACATGTGTGCCGATCCAGTCACCACCCAGCAAGCAGAAGGTGTCCCACCTGTCAGCATGGCCAGGAAACAGGAGGCACAGCTTTAAGATGTGGGACAGGGTCAGTGAGTGGGAGTGGGAGGGACTCTCAGCAGGTACATGCAAGTCTGTGTAGAGGCTGCGGTGCCCCCAGAGGCCCTGGGAAGCCCAAGGGACTCCAAGGTGTCCCCTCGCACCTGCCTTGCCACAATTTGCAACCGCCCTGATATGTGAGACCCCCGTGACAATTAGTTCCGTATTTTGCCTCACGTGGGCAAGTCCTCCACTGATCATTCACAAAGCCCCAAGCACCATGTCCGGTGGTGACACCAGGGGAGCCATCTTGAATAGGGTTTAAATAGGGTTTACTTAATTCTCTCCCGCTTCCTTGGAGGTGAGCGCCTCCAGGCCCTGGTATCTCTGACCACGCCCATTATTTCCCTGGGCTCTCTTCCTAGCTGGGAGTCTTGGGAACTTCTTTAGCGTCCCCGAGGTGGCTGGAGGCACCAGGGACATGAGACCAGACGGTGCTGCTGCTGGTGGTTTGGGATTGGTGGGCAGAAGGATTCATGGGAGAGCTTGGTGGGACCCACGTGTGTGTCGCCATGAGAGCAATGCCCCAACCTTCCACTGGGCAG
Seq C2 exon
GATCCCCTCTTCACTGGACAACTTGCTCCTGCACGCCATTGAAACCACCATCATCGACTGGTCCCACCAGATCCGGGATGTGCTGAGCAAAGACTCAGCCCAGGCGCTGCTGGATGGGCTGCACCCCCTGCCCCAAGTGGAGTTCGAGTTCTGGGACACTCGGCTGCTGAACCTCAAGTGCATCCATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(9.9=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAACATGGCTGGATGGC
R:
GGATGCACTTGAGGTTCAGCA
Band lengths:
354-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)