GgaINT0127332 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1013383-1015995:+
Coord C1 exon
chr18:1013383-1013579
Coord A exon
chr18:1013580-1015836
Coord C2 exon
chr18:1015837-1015995
Length
2257 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
AGCAGTCTGTTATTTTGCAGCCC
3' ss Score
6.92
Exon sequences
Seq C1 exon
GTGATTGTGCCCATCCTGACAAACAGGAAGAACCATCAGGGCTGGCCACGGGTGGTGTCACAGGACATCATACGTCATGTCCACAGCTTGAAAAGTGCCGTCTTTGTGGTGGTTGGCCAAGTGAAAGGCAAGACCTTGCTGCCTCTTCCAGCAGGCTCAGAGGGAATAGAGAACATTGATCTGGAACACGAGAAATT
Seq A exon
GTGAGTATCGCTGCTTGCTGTCCTCTGCTTATGTTCTGCTGATGCATATGCTGTGTTCTGGGAAGCCCTCACCAATCATAGCGGCTCTCATTGCTCACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTGGTGGAATTCCAAACTTTGTGGAGAAAAAAACTGTGAGCAAAACCTCTGCTGCTTTCCTGTTAGCTAGGAGTGGGAAGCCAGGGGTCTCCTGGCCAGACTTTCTTCTGGCTTCAGTTTGCCAATACATCCCCCTCGGCTGCACTGCTCAGAAGTTGTGTGACCCACCTGTTCATGATTAGTGCTGCCTGCTTGGTCAGGGCTATTCTGCCTCCTTTCAAAATCAGATTTATTATGGAAAGGTACCTGAAACAACAGCTACAACTTCCTGCAAGTTTCTGAGCTGTTTGTGGTCCCACTTAGAGAGATTGGAAAACTGTTGCCTGTGTCCTCTTAAGGAACTTCTTGTGAAGTGGGGTGCCTTACCAGACACCCACTGTGTTTCCTTGTGTTTCTCTGTGAGACATAGATGAGCACTGTGATTCTCTGTTGTCTCTGTTCATGGTTAGACCTCCCTGCTGGCTGTTGTGATTCTGAAGTTCACTTCCAGTCCCTGAGGGATGACCCCCAGGAAAACCACCCCAGCATCTCTGTCTGGTTAGCACAACCTGGGGAGGCTGAGCCCCTGCCATAGCTTCAGCAACTGAAGCATCACTGTCCTTATGCTAGTGTTATGTCAGGCAGGGTGCTCACACTGCAACTGTGGGGAGCTTCCATCCTGGTCCCCTGAGCAGCCAGCCCAAAACTGGCAATCAGAGGGGTTTGAATGCTGCATTCCTGTGAGGCTGGCCCAGGGCAAGGTAATAAAGTCTGGGCAGCATGTGGTGGCAGATGCCTTTGCACATTGTGTCATCCCCATCCCTGGGCTGCGTTTGCACCCTGTGTCCTCAAGAGTATGTTAGTGTATGTGGTATGTTAGTGAGTGTGATGGGACTGATCACTCCTTGGACTGGACATGGTGTGGGTGGGATTGCACGAGACTGCACTTCTTCCCAGGCAGGGGGTTGACCTGTCCTGAACACACCTGCCCAGCTATGTGGTTTCTTTCCATATTAAGTGAGTTAATGACAGTGGGTGAGAGCATCCTGCTGCAAGTGTGGCTCTCCAGACTGGACACTGAGCCCAAATGGATCTGATGGTTTGGGAATGGCTATGTGGAGACTCTCTCTTCCACCATTCCTTTTATAAACCTTGCCCATAGAAGTGTACTGTTGCCTGGATTACTGTTGAATTTAACTCATTTTCTCCAGATTGCAATTTCTGCATTGAAGTAACAGCAAAACCTTAGTTCTGGATGGTTTTCTGGTTTTGAAACATGAAGCTGGACCTTAATCTGTAAAATGTAGCTGCCCTTGTGATCATTTGAAGCAGATACAGCTGAGTTTTAAGCATAAACAAGCAGAAATCAAAGTTAACCAAGCAGTCTGTTATTTTGCAG
Seq C2 exon
CCCGGAGCGGATAGATAAATCTCTTGTGCATGCCACGGAGTCGGCTATCATAGACTGGAGCTACCAGATCCAGAGAGCACTGAAGAAAGAGTCCTCAGAGCCTCTCCTGCAAGGCAGTAATCCCAACCCCAAGGTGGAACTGGAGTTCTGGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(8.2=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]