BtaINT0050791 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30972599-30975026:+
Coord C1 exon
chr19:30972599-30972795
Coord A exon
chr19:30972796-30974867
Coord C2 exon
chr19:30974868-30975026
Length
2072 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
GAGACTTGTCTCTTTCGCAGCTT
3' ss Score
6.63
Exon sequences
Seq C1 exon
GTTGTCATCCCTGTCCTGGCCAATGAGAAGAACCACCTAGACTGGCCCCACGTGGTTTGTCAAGATGTCCAGCGGCATGCCTACAGCCTCCAGGGTGACCTTCTGGTTCTCCTTGAGCAAGCGAAGGGAAAAACCCTGCTGCCCCTTCCAGTCGGCTCAGAAAACATGGGCTCTGAGGGTTCTGAAATCGAGGCCAC
Seq A exon
GTAAGTACCGCCAGGCTGGCCATATGGGTCTCGGAGATAGGGGAGATGCCGGTTTATCTGAATGTTTTCTCTACGACTTTTCTGTCCCTGACTCTGCACGTCTCCTTCTTCTGCACACAAGCCCACTGTTGGCCAGCATCCTCAGACTGTGTGTTCCATGCTGATTACCACCCTCACCAGTACCCCCACCCAAGTCTCTCAAGGCTATCACGGCAACGTGGCCTTCTTTCTGCTCAGAACTATCTGAGAACTGAGAGCAGCCACACTGATTCCAGAGTTTCCCTTATCAGGACCGTGTCTCATCGTTGGCAGAGACCCAGGTCCAGTCTGGGAGACAGCACGCCTCTTCCCAGCATTTACTCAGCACATCATGTCGCTGTCCAGACCCTCTACCAGCAGCAGCTGGAGAGTGTTTTCAGGTCCTGGGGACATTTTTTTTTTCCCCAAGTAGAAACAAATCAGCTTTGTCGAAGTTTGAGGTCCTTGCCTTCTGTGACTGCAGAGGCATTAAACCCCATGGCCCTTCTCCTTATAGGAGTGATACCCACTGTCAGCTTCCACTTACCATTCCAGCCCTGAGCTATCTTTGCTTCTGTTCTGTGGGGATTTTCTTCTTTTTCTTTAGAGTCAGGCTATGTACCTAAAATAATATGTATATTTTTTAATTGTCTTCTAGTAAGCATTCTGTATGTTTGTGGCAACAGTCCACTTTCCTTCACGCGTTCAGTCTGCCACATTGCTGGGACTTTGCAAACGTATTGTCTGTTCAGGGCCCATGATTTGATCTGCAGAATGAGTAATGCATGGGATAGAAATATACTTTACAGTGAGTTTTTTCATATTGGAAGTAATATGCTATGTATATAATTTGAAGCAATCCCAGTTAACTGGAAAACTTATAGGGGCTTCATAAAAATATACAATTTTCGAAATAAATACCTTCAAACGACCATTCTTCTGTTCCTTCTCTCTTTGAATATAACAACATTCAGTGTGAATGTATAATCATTGTGGTGTTTGTCTCCCTTTGTTCAAATTTGATAATTTCCCAAGAGGCTGGATCGTATTACTGGGAGGTGAGTATCTTCTACCTTTAATATCATCCATAATCACTTGTGCCATATCATTGCTCAGCAAATATGAACTTAATTAAATGAAGCGAAGGTGGATTTCTGGCATGAAAAATGCAAATGACAGATTCTCTGTCACCTGTGTCCTGTGTTCTCGGCATGCCTGTGTGTGTGCTAAGCCACTTCAGTCGTGTCCAACTTTTGCGACGCCATGGACTGTAGCCCTCCAGGCTCCTCTGTCCATGGGAGGCTCCAGGCAAGAATACTGGAGTAGGGTTGCTGTGCCCTCCTCCAGGGGATCTTCCCCACCCGGGGATTGAACCCCTGTCTCTTACATCTCCTGCATTGGCGGTGGGTTCTTTACCACTAGTGCCATGAACAGCTGTCAGTTCAGACTGTATGAAAAGGCAAACCAGAATGTATTTTTGATTTTTAATCCTTTCCAAACATCCCTAGTTAGTTTATTTTAAAGACGTATGAGGGACAACACATGGGAATTCCATCTTCACTGGAAAAGTGAGGACAATAGTAATGTTCAGACATCTGACAACTTGCCTGATGGAGGAGGAAGTAACCTGTTTCTTCTTGCTGAGGCGGTCAGAACTGAGACCAGATGAGGGACTAGCAGGGAGATGAACCTGGTCCTGGGTAGAGACAAACTCTTTCCCAAGGACAGCTGATCTTCTCAAAGAATGCACTGCCTCATCAAGCAGGGAGCTGGCTGGCATTGGTGGGACTCAAGGGTTGGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCCACCTGCAGTATGAGAGACCCGCATTAGTCCCTGGGTCCCGAAGATCCTATAGAGAAGGGAATGGCTACTCAATCTAGTATTCTTGCCTGGATAATTCCACGGACAGAGGAGCCTGGCGAGCTACAGCCCGTGGGGTCACAAAGAGTTGAACACAACTGAAGTGACATAGCCCATAGAGTTAAGCTCTTCCCTGCATCCCAGGAGACTTGTCTCTTTCGCAG
Seq C2 exon
CTTGGATTCTACGGACAAGTCCATCATCTATGCCATTGAGTCTGCAGTGATCCAGTGGAGCCACCAAATCCAGCTGGTGCTCAAGAGAGAGTCTTCGCAGCCGCTCCTCCAGGGGGAGAACCCTACCCCACAGGTGGAGCTGGAGTTCTGGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(8.2=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development