RnoINT0049244 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52698541-52701926:-
Coord C1 exon
chr10:52701730-52701926
Coord A exon
chr10:52698700-52701729
Coord C2 exon
chr10:52698541-52698699
Length
3030 bp
Sequences
Splice sites
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
3' ss Seq
GAATTTCTTGTCTTTTGCAGCTT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTCATTATTCCTGTCCTGGACAATGAAAAGAACCATCTAGACTGGCCCCACATGGTATGTCAAGACATCAGGCATCATGCCCACTCCCTGCAGTCTGATCTCCTGGTAATTCTTGAACACATGAAGGGGAGAACCTTGCTACCTCTTCCAGTTGGCTCAGAAAAAGTGGAGTTTGTGGATGGCCAGAGTGAGCCGGT
Seq A exon
GTAAGTACCAGCAGCCCACAGACTTTGGTGATGACACAGAAACAGGTTCATTTGTAGTATATTCCCCAGGGCTTTTCCTGTTCCTGACTGTGCGTATCTTAGTCCCCACACAAGCCCACTGTTGACCTCTGCCAACATCCTTGGACAGTGTTTTCGTACTGATTATGCCCCCTTGCCCAGTCTTAACTGTTTGAGGTCTCCTAAGGTTCTCTTGGCAATGTGACTTTTTTTTTAACCCAAATCATTTCAGGGCTCAGTTCAACCATGGGATCTTCAGTGTACTCGAGATTGGCCTATGCCCAGCTGATAGCCAATCCAGTGGCTATATAGCTCTTACCTGCATTCCCCAGTGTGCAGTGCCATAGTTCTAGCTTTCCTGTATCCCCAGTGTGCAGTGCTGTAGTTCTAGCTTTCCTGCATCCCCAGTGCGCAGTGCTGTAGTTCTAGCTTTCGGGAGCTTGCTGACATTCCAGTCTCCATTCCCCGACAGTTTCAGACTTTTAGCACCCTAGAGATCTTTGATTTTGTTTTCTAACCTCAAGTCCAGACAAATCTGGCTCTATTGGGGAGTCGGTGCCCACTGCCCCTGAGTGGACATTAAAACTGCAGCCTCCATTGCCTATGTTGGTTTTGCTTATTTATTTGAGACTGGCTTTCCTTCTGTGTCTTAAGCCATCCTCAGATTTTCTACATAACACAAGCTGGTCTTGGACTCAAGATTCTCCTTCCTCAACCTCCCCAAGGGTAGGATAACAGTCCTGTGCCAACACACCAGATCTTCTGCATTACAACATTATGTTTTTCATCTCTAGTTCCTCTCAACTCATCCAGGCTTGAGTTTTCTTTGTCTTTATACCCAGGAGTATTTTCCCTTCCAATTCAGGCTATGTAAATATTTGTTCCTTATATTTTTACCCAGTATTTCTATGCATTTGTGGCAGTAGGTCATCTCCCTGCATAAGTGTGGTCTGGTTGTCATTGTGTTGATTCAGGAGCCTGAAGGATAAATAAAGCATGCAATTGCAGCTTATTTCTCAGTAGTTTTATGTGAGAAATGATTATATATCTGTATATAATTTGAAGTAGCATCCTAGTTAACTAGAAAACTAACTGTAGTTTAATAAAAATGTCTAATTTTCAAAATAAATACAATTAATCTTTTCCATTTCCCAGCTCCTCTATACCATACCTTAATAACATTCAGCTCATATATACAGATCCTTGCTCAGTCTGTCTTCTTCTGTTCATCTTAGATAATTTCCACACAGGCTGCATCATTTGGGGGAGAAGAGCATTTTCTTTTAATGTCTTTCATAATCACTTGTGCTGTATCATTTCTGAGCAAATATGAATTTCCCATTAAGTCAAGGTAGTTCCCAGTGTAAAAATATCATCTATACAACTATATATTTCCTTTCCTCATTATTGTGTCCTTATTGCCTGGCATATACAGTTTCCTGTTAAGACCCTGAAGAGGAGCCAGTCCAAGTTTTATTTTAATTTATTTAAAATGAAAATGCAGTTACTATTATTGTGGTATCTGGGAATGTGTATTGGAGTATGTGTGTGTATGTATGTATGTATGGTATGTACGTATGTATGTATGTATGTATGTATATGTGTGTATTGTGTTTGTGTATATGCGTGCTTGTGTATATGGAGTGTATGTTAGTGTATATGTGTGTGTGTAATATATGTATATGTGTTTATATGTGTTTGTGTGGTTGAAAAGGGATACTTGGGAATTCCATTTTTTGTTGGAAATCTGAAGACAGAATGGAATCACCCTGGTAAGTCCTAGGGAGGTAGATGTAGCAAACTGTTTCCTGGAAGAGCTAGTTAGCCAAGGAATCAGGTTCTGTGCTATGCAGGGAGCTTGTCCTCTGGTGAGATTCACAGCAGAAATGGACGTTTGGGGTGGTTTTTCAATGTTTCAGCCATTGACAAGATTTTGTGCCATTTAAAGTTCTTAAATTAGCCTTCAGAATATTGGTGGAGGCTTGACTGTATGGACAATGTTGAATATATACACGAGTAAGCCTGTTTCCCTAGAAAAGGATTTACACAGTTTGTTGATGTGCTTTAAAAGAGTCTATTACAGGGAAGAGGGGTAGAATTCTTAGGGTAAAGGCCCTGGAGAGGGTTCTGTTGGTAAAATTCCTGGCACACAAGCATGGGAACCTGAGTTCAGATCCCTAGTACCACAAACACTGAACATGAAATTGTGTACCTGTAACCCCCTTGCACTGGGGGATCAGTAAGTTGGAGACAAGTAAACCCCTAGAGCTCCTCAACCAGCCAGCCTAGCCACACCAGTGAACTCCAAGCTCAAAGAAGAGTTCCTGTAACAAAACATTAGGCAGAAAGATTCCAGAGACATTACATAGCAACCTCTGGACTCCATATCCATGTGCACAGGCAAGGCACCAACATATACACATCTATATGAACTTGTACATAGGCAGACACACCAGCACACAGACACACTTTTTAAAAACAAAAGGATTCATAGGTTAGGTGGGATTTTCCACCTGTTTTGAAAGACTGAAAGCTTTCTTTTAGAGAACACCCAGGAATATTTCTTGAATTAGCTTAAGTTTGTTCCCCCGAAGTTTTGCACATTGGCAAACTTTTTCAGTGTTGCTCTATGGAGAGATGGTGGGATCCTTAAGACTTGGAGCTTAGTGCCGTGCCATTAGGTCATTGGGAGCACTACCCTCAGAGAGGACTAATGTAAATCCTGGAGGGCCTCAGCTCCCTCCACATTATAAAAGGGTAAAGCTAGCCCCTGCCTACCTTTTGGCTTCCCTCATTACTGTGTGAATCTTCATGCACTTGTTACTACCTCAATGCCACCCACAATATATCCTGCACTTTGTCATGAACTGCTGACCTTCCAAAGCACTAGCTAAATGAACTTTCTTGCAAGTTTCCTAGCCTGGGGGATGTTGTTACAGCCACAGAGGATGAGTGAATACACCAGACTTAAATTCTTTTTAAACACACTGGAGAATTTCTTGTCTTTTGCAG
Seq C2 exon
CTTGGATTCCATAGACAAGTCAACTGTCTATGCCATGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGCCACTCATACAAGGAGAAAAGCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(8.2=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]