MmuINT1008881 @ mm10
Intron Retention
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66156820-66160053:-
Coord C1 exon
chr11:66159857-66160053
Coord A exon
chr11:66156979-66159856
Coord C2 exon
chr11:66156820-66156978
Length
2878 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ATTTCTCTTGTCTTTTGTAGCTC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTCATTATTCCTGTCCTGGCAAATGAAAAGAACCATTTAGAATGGCCCCACATGGTATGTCAAGACATCAGACATCATGCCCACACCCTGAAGTCTGACCTCCTAGTGATCTTTGAGCACATGAAGGGGAGAACCTTGCTGCCTCTTCCAGTTGGCTCAGAAAAACTGGAGTTTGTGGATGGCCACAGTGAGCCAGT
Seq A exon
GTAAGTACCACCAGCCCATAGGCTTTGGCCATGGCTCAGAAACTGGTTCATTTGTACCATCTTCCCCAGGGCTTTTCCTGTTCTTGACTGCATATCTCAGTCCACAAACAAGCCCACTATTGACTCTGCCAACGTCCTTGGACTATGTATTCACACTGATTATGCCCCTTGCCCAGTCTTACTGCTTGTGGTCTCCTAAGGTTCTCTTAGCAATGTGGCATTTTTTTTTTTACCCAAATAATTCCAGGGCTCAGATCAACCATGGCATTTTCGGTGTTCCTGAGATATGGATGATGTCCAGCTGATAGCCAATCCAGTGGCTATTCAGCTCTTACCTGCATTCCCCAGTGTGCAATGCCACAGTTATGGCTTACAGGCTCTTACTGCCATTCCAGCCTCCATTCCCAGCAGCTGCAGACTTTTCACACCCTGGAGATTTTTTGTTTGTTTTTTAACCTCAAGTCCAGACAAATCTGGCTCTACTGGAAAGTCAATGCCCCCTGCCCTTGAGTGGAGATTAAAACTACAGCCTTCATTGTTTATGTTGGTTTTGCCTATTTATTTGAGACTGGCTCTCATTCTCTGTTCTAAGCCATCCTAGTGTTTTCTACATAATACAAACTGGCCTCAGACTCAAGATTCTCTTCCCTCAACCTCCCTAAGGGTAGGGTAGCAGTCCTATGCCAACACACTGGATCTTCTGCATTACAACATTATGTTTTCCATCTAGTTCCTCTCAACTCTTTCAGATTTGAGTTTTCTTTGTCTTTGTACCCAAGAGGTGTTTTTTTTTTCCTTCCAATCCAGGCTATGTATGTAAATATTAGTTTCTTATATTTTTACCCAGCATTTCTATGCATTTGTTATAATAGGTCATCTCCCTGCATAAGTGTGGTCTGGCTGTCATTGTGTTGATTCAGGAGCTCTGATGTACCTGAAGAATGAGTAAAGCATGCAATTGCAACATGCTTCTCGGTAGTTTTATGTGGGAAATAATTATATATCTGTATATAATTTGAAGTAGCATCCTAGTTAACTGGAAAACTTACTGTAGTTTAATAAAAATGTCTAATTTTCAAAATAAATACAATTAATCTTTCCCTTCTCCCTAGCTCTTCTATACCATACCTCAATAACATTCATCTCGTGTATTCAATCCTCATTGAGTCTTCGTATGTCATCGTTAGATAATTTCCACACAGGCTGCATCATCTGGGGGAGGAAAGCATTTTCTTTTAATGTCTTTCATAATCACATGTGCTGTATCATTTCTGAGCAAATATGAATTTCACATTAAGTCGAGGTAGTTCCCAGTGTAAAAATATCACCTATACATCCATACATTTCCTTTCTCCATTCCTGTGTCCCTGTTGCCTGGCACATACAGTTTCCTGTTAAGACCCTGAAGAGGAGCCAGCCCATGATTTATTTTAATTTATTTAAGATGAAAATGCAGTTACAATTATTGTGGTATCTGGGTATGTATATGAAGTGTGTATGTGTGTTTGTGTGTGTGCATGCTTGTGTGTACATGGAGTATGTGTATGTAAGTGTGTGTTCATGCTTGTGTGGGGGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTATGCATGTTTGAAGGGGAATACTTAGGAATTCCATTCTTTGTTGGAAGTCTGACGAGAGAATAGAATCATTCTGCTAAGTGCTGGGGAGGTAGATGTGTCAAACTGTCTCCTGGAAGAGCTAGTTGGCCAAGGAATCAGCTTCTGTGCTATGCAGGAACCTTGTCCTCGGGTGAGATTCAAAGCAGGGATGGACATTTGGCTGGCTTCTCAATGTTTCATTCATTGACAAGATTTTGTGCCATTTAAAGTTCTTAAATTCGTCTTCAGAATATCAGTGGACCCTTGACTGTACTGAAAATGTTGAATATACACAAGAGTAAGCATGTTTACTCAGAAAAGGATCTAGACTGTTTGTTAATGTGCTTTAAAAGAATCTATTACAGGGAAAGGGGGTAGAAATCATAGGTTAAAGGCCCCAGAGTGGGCTCTGTTGGTAAAATGTCTGGTACAAAAGCATGGGACCTGAGTTTAGCTCCCTAGCACCCACAAAACACTGAGCATGAAATTGTGTCCACTGGAGGATAAATGAGTTGGAGACAAGTGGATCCCTGGAGCTCCTTGGCCAGCAGCCTAGCCAAACCAATGAGAGTCTCTGTATCAAAACATAAGGCAGAAAGATGACAAAGACATTAGATAGCAACCTCTGGCCTCCATATTCATGTGCACAGGCAAGGCACCAACATATACACATCCATGTGAACATATACATACATACACAGCCACACAAACACTCAAACACACTTAAAAAACAAAAAGATTTGTAGGTTAGGTGGGATTTTCCACCTGTTTAAAAAAGACTGGAGGTTCTCTTTTAGAGAACACCCAGGAATATTTCTTGAACTAGCTTAAGTTTGTTCCCCCAAGGTTTTGTGCATTGGCATTTTTTTTCAGTGTTGCTTTGTGGGGAGGTGGTGGGATACTTAAGACTTGGAGCTTAGTGCAGGGCAGTTAAGAGCATTCCCTCAGAGAGGACTAATGTAAGCCCTGGAGGACCTCAGATGAACCTGTTATAAAAGGGTAAAGCTAGCCCCTGACTTCTTTTTGGCTTTCCTCATTGCTGTGTGAATCTCCAAGTGTTCATTACCACCACAGTGCCAGCCACAGTACATCCTGCACCTCGTCATGCACTTCTGACCTTCCAAATCATGAGCTAAATGAACTTTTTCTGTAGGTTTCCCAGCCTGGGGAATTTTGTTATAGCCACAGAGGACAGGTAAATACAGGCTTAAATTCTTTTCACACACACTGGGAGATTTCTCTTGTCTTTTGTAG
Seq C2 exon
CTCAGATGCCATAGACAAGTCAACTCTCTATGCTGTGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGGCACTCATACAAGGACAAAATCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752:ENSMUST00000080665:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(10.9=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types