HsaINT0050054 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11608129-11610554:+
Coord C1 exon
chr17:11608129-11608325
Coord A exon
chr17:11608326-11610395
Coord C2 exon
chr17:11610396-11610554
Length
2070 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TGTTGTTTTGTCTTTCACAGCTT
3' ss Score
11.13
Exon sequences
Seq C1 exon
GTTGTTCTACCCGTCCTGGCCAATGAGAAGAATCGCCTAAACTGGCCCCACATGATATGTGAGGATGTCAGGCGGCACGCCCACAGCCTCCAATGTGACCTCTCAGTTATACTTGAGCAAGTGAAGGGAAAAACTTTGCTGCCTCTTCCAGCAGGCTCAGAAAAAATGGAGTTTGCGGATTCCAAAAGTGAGACAGT
Seq A exon
GTAAGTACCGCCAGCCTGGCCATATGGGCCTCTGAGATATGGGAGATGCTGGTTATCAGAATGTTTTCCTTACAACTTTTCTGTTCCTGACTCTGCACATCTCCTCGTTCTGCACACAAGCCTACTGTCTGCTCTGTTTGCCGACACCCTCAGACTGTGGACTGTGTGTTTACCCTGGTTACTCCCTGGCCCAGCCACTGCATGAAGTCTTCCAAGGCTATTACAGCAATATGGCCTTTTTTTCCTTTCAGAATCATTTCAGGGCTGAGCGCAACCACACTAGCTTTCCGTATTTTGCTTATCAGGATAGTGTCTCATCATTGGCAAAGACCCAGGTCCAGTCTGGGAGGCAGGCATGCCTCTTCCCAGTGTTTACTCAGTACATAATGTCACAGAACTATCGCTGCCGGCTCTTGTTACAGTTCCAGACTCTCCTCCCCCAGCAGCTGAAGACTTTTTACAGGTCCTGGGGATTTTTTTCTCTTTTCAAATAGTAGCAAATCTGGCTTTGTTGGGACCTGGCTTTGTTGGGAGTTCATGCCTCCTGCCCCTGAGTAGGCCTTAAAACCCCAGGCTTGTCTCCTTTTAGAAGTTGAATCCACCGTCAGCTTCTGTTTACCATGCTGACTTTCGAGTTTTCTTTGTTTCTATCCCTTGGGAATTCTTTTCCCCTTTCAAGCCAGGCTATGCATATAAATATTAATAGTATATTTTGCTATATTTCATCCAGCATCTCTATGTGCTTGTGGCAACGGACAGCCTTCCTACATGAGCTCGGTCTGCCACACTGTCAGGAGTTTCCCAATGTATTACTGTCAACATTGTGTATTCAGGATCCATGATTTGATCCGAAGAATAAGTAACGCATGCAACAGATTATATGCGTGCAATGCATTATAAAATACAACAATGTACTTTATAATGAGTTTTTTCTATCAGAAGTAATTTCCTACATATACAATTTGAAGTAATTTCCCAGTTAATTGGAAAACTTATTGCGGTTTAATAAAGATATCCAATCTTCAAAATAAATAAATTCAAACTACCCCTTTTCTAGTCCCTTTATATTTTAACTTTGTAACATTCAGTGTGTGTTTCTAATCATTGCTGAATTTATCTCTGTTTGTTCAAGTTTGATAATTTCCCAAAAGACTGGATCATTTTGGGGGAATGGGTGTCTTCTTCCTTTAATATCTTCCACAATCACTTGTGCCGTATCATTTCTCAGCAAATATAAATTTAATTTAATGAAGTGGAAGTGGGTTTCTGACATAAAAATGTGAATTGTATGTCCTCTTTCTTTGTCGTTGTGTCCTTGATTCTTTGCACCTATCATTTTCAGTTAAGACTGTGAAAATAATGACCAAAATGTATTAAAAAAATTTTAACTGCTTCCAAATATAGCTAAGTTACTTTCTTTAAAAGTTGTATGAGGGGAAAAGTTTGGGAATTCTATTCTTCACTGGAACAATGAGGACCAAGTGAAATCGTGATGGTGATCTTCAGGTGGCTGATTATTAGCCTTGTGAAGGAGGAAATAAACTATTTCCTCTTGCTGCACAGGTCAGAGCTAAGACCAAGATGAGGAAATCACAGGGAGTTAGAAATGGTTCAGTATAGAGACAAACTTTTTCCTTGGGAGAGCCAACCTATTGAGAAAGGTGCTGCTTTGTGAAGTCGAGAGCTTGCTGTCACTGGTAGGATTCAAGCAAGCATTGGGTGGTCATCTGAATATTTTCTGTCCACGGTATTCCTGCATTGGCAGGACAACGTACTGGCATTCAAAGTTCTTAAACTAGTCTTCAGGATATTGATGAGCCCTGAATCTGTATGAAAAATGTACATACACACACATAAGCATTTTTTTTTTCTGGAGAGAGGATCTATAATTTTCGTTGACTAGTCAACAGAGACTGTTATCCAAAAAAGTTAAGAATGCATGGGCTAGATGAAATTTCTCACCTATTTTTTTAAATTTGGGATTCTGTCTTGGGGTACACCCAGGGTTATTTTCACGCCTCAGGGTTTTTGTTTTTGTTGTTATCATTGTTGTTGTTTTGTCTTTCACAG
Seq C2 exon
CTTGGATTCTATAGATAAGTCAGTCATCTATGCCATTGAGTCTGCAGTGATCAAATGGAGCTACCAAGTCCAGGTGGTACTCAAGAGAGAGTCTTCCCAGCCACTCTTACAAGGGGAGAATCCCACCCCTAAGGTGGAGTTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(51.1=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development