MmuINT0051213 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65970322-65973555:-
Coord C1 exon
chr11:65973359-65973555
Coord A exon
chr11:65970481-65973358
Coord C2 exon
chr11:65970322-65970480
Length
2878 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ATTTCTCTTGTCTTTTGTAGCTC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTCATTATTCCTGTCCTGGCAAATGAAAAGAACCATTTAGAATGGCCCCACATGGTATGTCAAGACATCAGACATCATGCCCACACCCTGAAGTCTGACCTCCTAGTGATCTTTGAGCACATGAAGGGGAGAACCTTGCTGCCTCTTCCAGTTGGCTCAGAAAAACTGGAGTTTGTGGATGGCCACAGTGAGCCAGT
Seq A exon
GTAAGTACCACCAGCCCATAGGCTTTGGCCATGGCTCAGAAACTGGTTCATTTGTACCATCTTCCCCAGGGCTTTTCCTGTTCTTGACTGCATATCTCAGTCCACAAACAAGCCCACTATTGACTCTGCCAACGTCCTTGGACTATGTATTCACACTGATTATGCCCCTTGCCCAGTCTTACTGCTTGTGGTCTCCTAAGGTTCTCTTAGCAATGTGGCATTTTTTTTTTTACCCAAATAATTCCAGGGCTCAGATCAACCATGGCATTTTCGGTGTTCCTGAGATATGGATGATGTCCAGCTGATAGCCAATCCAGTGGCTATTCAGCTCTTACCTGCATTCCCCAGTGTGCAATGCCACAGTTATGGCTTACAGGCTCTTACTGCCATTCCAGCCTCCATTCCCAGCAGCTGCAGACTTTTCACACCCTGGAGATTTTTTGTTTGTTTTTTAACCTCAAGTCCAGACAAATCTGGCTCTACTGGAAAGTCAATGCCCCCTGCCCTTGAGTGGAGATTAAAACTACAGCCTTCATTGTTTATGTTGGTTTTGCCTATTTATTTGAGACTGGCTCTCATTCTCTGTTCTAAGCCATCCTAGTGTTTTCTACATAATACAAACTGGCCTCAGACTCAAGATTCTCTTCCCTCAACCTCCCTAAGGGTAGGGTAGCAGTCCTATGCCAACACACTGGATCTTCTGCATTACAACATTATGTTTTCCATCTAGTTCCTCTCAACTCTTTCAGATTTGAGTTTTCTTTGTCTTTGTACCCAAGAGGTGTTTTTTTTTTCCTTCCAATCCAGGCTATGTATGTAAATATTAGTTTCTTATATTTTTACCCAGCATTTCTATGCATTTGTTATAATAGGTCATCTCCCTGCATAAGTGTGGTCTGGCTGTCATTGTGTTGATTCAGGAGCTCTGATGTACCTGAAGAATGAGTAAAGCATGCAATTGCAACATGCTTCTCGGTAGTTTTATGTGGGAAATAATTATATATCTGTATATAATTTGAAGTAGCATCCTAGTTAACTGGAAAACTTACTGTAGTTTAATAAAAATGTCTAATTTTCAAAATAAATACAATTAATCTTTCCCTTCTCCCTAGCTCTTCTATACCATACCTCAATAACATTCATCTCGTGTATTCAATCCTCATTGAGTCTTCGTATGTCATCGTTAGATAATTTCCACACAGGCTGCATCATCTGGGGGAGGAAAGCATTTTCTTTTAATGTCTTTCATAATCACATGTGCTGTATCATTTCTGAGCAAATATGAATTTCACATTAAGTCGAGGTAGTTCCCAGTGTAAAAATATCACCTATACATCCATACATTTCCTTTCTCCATTCCTGTGTCCCTGTTGCCTGGCACATACAGTTTCCTGTTAAGACCCTGAAGAGGAGCCAGCCCATGATTTATTTTAATTTATTTAAGATGAAAATGCAGTTACAATTATTGTGGTATCTGGGTATGTATATGAAGTGTGTATGTGTGTTTGTGTGTGTGCATGCTTGTGTGTACATGGAGTATGTGTATGTAAGTGTGTGTTCATGCTTGTGTGGGGGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTATGCATGTTTGAAGGGGAATACTTAGGAATTCCATTCTTTGTTGGAAGTCTGACGAGAGAATAGAATCATTCTGCTAAGTGCTGGGGAGGTAGATGTGTCAAACTGTCTCCTGGAAGAGCTAGTTGGCCAAGGAATCAGCTTCTGTGCTATGCAGGAACCTTGTCCTCGGGTGAGATTCAAAGCAGGGATGGACATTTGGCTGGCTTCTCAATGTTTCATTCATTGACAAGATTTTGTGCCATTTAAAGTTCTTAAATTCGTCTTCAGAATATCAGTGGACCCTTGACTGTACTGAAAATGTTGAATATACACAAGAGTAAGCATGTTTACTCAGAAAAGGATCTAGACTGTTTGTTAATGTGCTTTAAAAGAATCTATTACAGGGAAAGGGGGTAGAAATCATAGGTTAAAGGCCCCAGAGTGGGCTCTGTTGGTAAAATGTCTGGTACAAAAGCATGGGACCTGAGTTTAGCTCCCTAGCACCCACAAAACACTGAGCATGAAATTGTGTCCACTGGAGGATAAATGAGTTGGAGACAAGTGGATCCCTGGAGCTCCTTGGCCAGCAGCCTAGCCAAACCAATGAGAGTCTCTGTATCAAAACATAAGGCAGAAAGATGACAAAGACATTAGATAGCAACCTCTGGCCTCCATATTCATGTGCACAGGCAAGGCACCAACATATACACATCCATGTGAACATATACATACATACACAGCCACACAAACACTCAAACACACTTAAAAAACAAAAAGATTTGTAGGTTAGGTGGGATTTTCCACCTGTTTAAAAAAGACTGGAGGTTCTCTTTTAGAGAACACCCAGGAATATTTCTTGAACTAGCTTAAGTTTGTTCCCCCAAGGTTTTGTGCATTGGCATTTTTTTTCAGTGTTGCTTTGTGGGGAGGTGGTGGGATACTTAAGACTTGGAGCTTAGTGCAGGGCAGTTAAGAGCATTCCCTCAGAGAGGACTAATGTAAGCCCTGGAGGACCTCAGATGAACCTGTTATAAAAGGGTAAAGCTAGCCCCTGACTTCTTTTTGGCTTTCCTCATTGCTGTGTGAATCTCCAAGTGTTCATTACCACCACAGTGCCAGCCACAGTACATCCTGCACCTCGTCATGCACTTCTGACCTTCCAAATCATGAGCTAAATGAACTTTTTCTGTAGGTTTCCCAGCCTGGGGAATTTTGTTATAGCCACAGAGGACAGGTAAATACAGGCTTAAATTCTTTTCACACACACTGGGAGATTTCTCTTGTCTTTTGTAG
Seq C2 exon
CTCAGATGCCATAGACAAGTCAACTCTCTATGCTGTGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGGCACTCATACAAGGACAAAATCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(10.7=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: