DreINT0058277 @ danRer10
Intron Retention
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:193798-194227:-
Coord C1 exon
chr12:194031-194227
Coord A exon
chr12:193957-194030
Coord C2 exon
chr12:193798-193956
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACACTGAATGACGTTTGCAGGTT
3' ss Score
6.14
Exon sequences
Seq C1 exon
GTTGTGGAGCCGGTGTTGTCAAATTTGAACAACCAGCGAGACTTCCCTAAAGTTGTTTCTCAGGATCTCATGCGACACATTCACGCCCTTCAAAACAACGTGTTTGTTACAGCTGGTCAAATCAAAGGCAAAACCCACCTGCCCGTACCTCTGGGATTCAAGCAGTTCGAGCAGTGCAGTCAACAGTTAGATAAGAG
Seq A exon
GTGAGGGCTTGGAGTAAGCACTCTCGTTTTGTCTGAGATATCTGCATTGCATTGACACTGAATGACGTTTGCAG
Seq C2 exon
GTTTCATGTGGTGGATAAAAGCCTGATTCACTCAATGGAGACGGTGGTGATTGACTGGAGTCATCAGGTCTATAAGGTCTTGAAGAAGGACTCGTCTGAGCCGCTGCTGGAGGGCCGAAATCCCACTCCACATGCAGAGATACAGTTCTGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383:ENSDART00000161178:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(11.3=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATTCAAGCAGTTCGAGCA
R:
TGCATGTGGAGTGGGATTTCG
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]