MmuINT0050738 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117987504-117988645:-
Coord C1 exon
chr11:117988452-117988645
Coord A exon
chr11:117987697-117988451
Coord C2 exon
chr11:117987504-117987696
Length
755 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CCCGACCTTGCCCTCCACAGGAT
3' ss Score
10.03
Exon sequences
Seq C1 exon
GTCCTCTACTCGCTGCTAAACCAGAGTGAGAACATGGATGGCTGGCCCCGGGTGGTGTCAGAAGACATTGTGAAGCAGGTCCACAGGCTGAAGAACGAGATGTTTGTGATGGGAGGCAAGATCAAAGGGAAAACCCTGCTGCCTATCCCCGAGCACCTGGGCAGCCTGGACGGCACGCTGGACTCCATGGAGAG
Seq A exon
GTGGGTGGCAGCTGGGGGTGGTGGGGGTGCGGGATCCAAGCCATGACCGTGAGCCACGGGCTAAATGCAGACTGACTATGATCGACAGTCATGAGCCGCTCAAGTGTAGGCTAGCACAGCGGCAAAATGCAACCACTCAGCAGTATCTACACCAGGGGTTGGGGGGACCCACCTGTATCTCCCTCTCCATTTACACACATGTGTAATCACTGCACGGCTCAGACGGTAATCCCACGAGCTGGCTCTGAAATGCCTCGCCGAGGGGCTCGTGGCAGGGATGCTTGGCAGGAAGGTACAAGTCAAATAGAGGGCTGAGGCGTCTGGAGCCACAGGAACCTGGGGCTCCCCGGCATCTAAAGCACCCTGGTATGTGAAACTCTAGAACTTACCCGGGTGAACTTGTCCACACAACGCCTACTGGATGATGGCTCCTCAGTCTCATTCTGACTGGTCCTCCAGGGACTGGCCATGAAGCCCCCAACATTGCCCTGTGGTGTGTGGGGCATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGGTAGTGACAGTGGTGGTGGTGACAGCAGTGGCTGTGGTGGCTTCAGGATTTTGTTACTTGTAGGCTGCTGGTGGGAGGCAGGGGGTAGGTAGATTCCCTCTCATTAGCAAGGGAATCCGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCCACAAGAGCATCATCCCGACCTTGCCCTCCACAG
Seq C2 exon
GATCCCCTCCTCCATGGACAACTCGCTCCTGCACTCCATCGAGACCATCATCATCGACTGGTCCCATCAAATCCGGGACGTGCTGAGCAAGGACTCAGCTCAGGCCCTGCTGGACGGCCTGCACCCCCTGCCCCGGGTGGAATTTGAGTTCTGGGACGCCCGGCTCATGAACCTGCAGTGCATCCACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(9.9=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAACATGGATGGCTGGC
R:
GGATGCACTGCAGGTTCATGA
Band lengths:
354-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: