HsaINT1011402 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78571590-78572894:-
Coord C1 exon
chr17:78572701-78572894
Coord A exon
chr17:78571783-78572700
Coord C2 exon
chr17:78571590-78571782
Length
918 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
CCCAACCTTCCACTGGGCAGGAT
3' ss Score
4.74
Exon sequences
Seq C1 exon
GTCCTCTCTTCTCTGTTAAACCAAAGTGAGAACATGGCTGGATGGCCCCAGGTGGTCTCGGAAGACATCGTGAAGCAGGTCCACAGGCTGAAGAATGAAATGTTTGTGATGAGTGGCAAGATCAAAGGCAAAACCTTGCTGCCTATTCCGGAGCACCTGGGCAGCCTGGATGGCACGCTGGAGTCCATGGAGAG
Seq A exon
GTGTGTGGGCCCAGCTGCTTCCGGCTGCCGCTGGGTGGGGAAGAGGCACATGCTTGACCCCCACCCCCCACCCCACTCCACCCCACTCCGACCCGTTGTTTCCCTGCAGAGTGGCTTCACATGTTAAAGCCGGGGAAATGCAGGGCAAGGTGGTGCGTTAGGTGGTGCTGAGACTGAGGAAGTTGAAACCAGGGCAGGGAGGGAGCAGGCTCTGCAGCCCCTGGGGCTCTGGCACCTGCACCCCACACCCCCCGCTGGGTCACACATGTGTGCCGATCCAGTCACCACCCAGCAAGCAGAAGGTGTCCCACCTGTCAGCATGGCCAGGAAACAGGAGGCACAGCTTTAAGATGTGGGACAGGGTCAGTGAGTGGGAGTGGGAGGGACTCTCAGCAGGTACATGCAAGTCTGTGTAGAGGCTGCGGTGCCCCCAGAGGCCCTGGGAAGCCCAAGGGACTCCAAGGTGTCCCCTCGCACCTGCCTTGCCACAATTTGCAACCGCCCTGATATGTGAGACCCCCGTGACAATTAGTTCCGTATTTTGCCTCACGTGGGCAAGTCCTCCACTGATCATTCACAAAGCCCCAAGCACCATGTCCGGTGGTGACACCAGGGGAGCCATCTTGAATAGGGTTTAAATAGGGTTTACTTAATTCTCTCCCGCTTCCTTGGAGGTGAGCGCCTCCAGGCCCTGGTATCTCTGACCACGCCCATTATTTCCCTGGGCTCTCTTCCTAGCTGGGAGTCTTGGGAACTTCTTTAGCGTCCCCGAGGTGGCTGGAGGCACCAGGGACATGAGACCAGACGGTGCTGCTGCTGGTGGTTTGGGATTGGTGGGCAGAAGGATTCATGGGAGAGCTTGGTGGGACCCACGTGTGTGTCGCCATGAGAGCAATGCCCCAACCTTCCACTGGGCAG
Seq C2 exon
GATCCCCTCTTCACTGGACAACTTGCTCCTGCACGCCATTGAAACCACCATCATCGACTGGTCCCACCAGATCCGGGATGTGCTGAGCAAAGACTCAGCCCAGGCGCTGCTGGATGGGCTGCACCCCCTGCCCCAAGTGGAGTTCGAGTTCTGGGACACTCGGCTGCTGAACCTCAAGTGCATCCATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(10.0=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAACATGGCTGGATGGC
R:
GGATGCACTTGAGGTTCAGCA
Band lengths:
354-1272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains