GgaINT1011495 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10072010-10072630:+
Coord C1 exon
chr18:10072010-10072203
Coord A exon
chr18:10072204-10072437
Coord C2 exon
chr18:10072438-10072630
Length
234 bp
Sequences
Splice sites
5' ss Seq
GTGGTGGGT
5' ss Score
4.29
3' ss Seq
GTAACTCAGCTGTTCTCCAGCCT
3' ss Score
-0.75
Exon sequences
Seq C1 exon
GTCGTGTGCTCCCTGCTGCTGAGCGAGGAGCACCTGGCGGGCTGTCCTGGTGTGGTGGCAGAGGACATTGCACGCCGTGCCCACAGGCTGAGGAACGACATGTTTGTGATGGGCGGCAAGATCCAGGGGAAACCACTGCTGCCACTGCCTGAGCACCTGGACGGCCACGACGGGACCCGCACGGTGCTGGAGTG
Seq A exon
GTGGGTGCTGGGGAGGACTGGGAGCTGCGGTGGGAGTGGGGATGGTGGCCCTTTCCTGGCCCTGCGCTGCCCACACTGACCTGCGCTCCGTTCAGATGGACGGCAGGCACCTGGCAGCGGGTTGTGCACCGGCGCCCTGGGAGCAGCTGCCCCACAATGGGCAGGGCTGGGGGTGACTGCGGGGCTCCCAGTGCGTTTGGGGCTGCTCGGGGCTGTAACTCAGCTGTTCTCCAG
Seq C2 exon
CCTGGTGGAGCCGGTGGATGTTTCCACGCTGCACTCCATCGAGACGATCGTCATCGACTGGTCTCACCAGATCAGGGAGATCCTGAGCAAGGACTCGGCACAGCCGCTGCTGGAAGGGCTGCACCCTCTGCCCAGGGCAGAGTTTGAGTTCTGGCGCACCAGGAGCCTCCACCTGCAGTGCATCAACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(9.9=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGTGGCAGAGGACATTG
R:
GAACTCAAACTCTGCCCTGGG
Band lengths:
296-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]