DreINT0161860 @ danRer10
Intron Retention
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62491453-62492176:-
Coord C1 exon
chr5:62492092-62492176
Coord A exon
chr5:62491936-62492091
Coord C2 exon
chr5:62491453-62491935
Length
156 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
3' ss Seq
CGTGTGTATGCGTGTTTCAGATT
3' ss Score
8.5
Exon sequences
Seq C1 exon
AATTGCCCGCATAACAAAAGGAGTTATACAGACTACAGTCAGCATAAAGAACAGATCCTGTCAGTGGGACCAATCAGAAGAAGAG
Seq A exon
GTTTGGAGTGTTTTTCAGATTTGTGCATGTGTGTGTGTGTGTGTATGTGTAGATTAAGACTGGAGGCAATAGGATGTGGGTGTATAATTAGATGTTTTGTGTATTAGCAAGGTGATTACAGCTATAAGAGTGCCTGCGTGTGTATGCGTGTTTCAG
Seq C2 exon
ATTCAGACTGGTGTGAAGAGAATAATGGTGGCTGTGAGCAGATCTGCACTAGTCAAGTAACTGGCGCTGTGTGCAGCTGTGTGACGGGAATGCTACAGAGAGACGGGAAGAGCTGCAGAGGTGAAACGTGAACACACACATGCACACATTTTCATGTACTGCTTGTTTATTTATTTATTTTTTTAATAAGCAGATGCATCCAGTACTACAGGCAGGGGCGGACTAGAACAAAAAATCAGCCTTGGCACTGTAGCCACACCAGCCCACATTACCACACCGACACAGCCCCACCCACGAACACGCACATTCACTACTAATATTGGTGTACAGATGGTGAAATAATATAAGCAGTACCATATGTAATAGATATTTAAACATTTAATGTATGTGACTGAAACAAAAGAAACCCATTTATAACAAATTTGATCATTCATTCATTCTCTTTATTAATCTGGGGTCGCCACAGCGAAATGAACCACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558:ENSDART00000149979:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(1.6=13.8)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCCTGTCAGTGGGACCA
R:
CCCCTGCCTGTAGTACTGGAT
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]