MmuINT0158793 @ mm10
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42330924-42331396:-
Coord C1 exon
chr9:42331309-42331396
Coord A exon
chr9:42331041-42331308
Coord C2 exon
chr9:42330924-42331040
Length
268 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
TCCCACATGTCCGTTTTCAGGGC
3' ss Score
10.42
Exon sequences
Seq C1 exon
AATTGCCCACAAAATTCCAGGATCGCCACAGATTATTCAAAAGAGCACAAAGAACAGATCATTTCAGTGGGACCCATTAGGAGAAAAA
Seq A exon
GTATGTATGTTCCTTAAAACACACTATAGATTACTAAGACATTGGGAGTTCGAGGCTCGGGCGTGCCTGCCTTGTGGTGTGTGTCCATCATGAGGAGGAGACACGAGAGACAGGGGCATGAGTGGACTGCCTGTGTCCTCCAGGAAAACCTTTTCATTGTCTTTTGACAACTCTTTCTTCTCCCCTCTCTTTGAAGCCCCTCCTCCGCCTTGATCATGGTGCCATGTTGCTGTGTCTATCATTAAGTCTCCCACATGTCCGTTTTCAG
Seq C2 exon
GGCTGGACTGGTGTGAAGACAACGGCGGCTGTGAGCAGATCTGCACCAGCCGGGTCGACGGGCCTCTGTGCAGCTGTGTGACCGGATCCCTGCAAGAAGATGGAAGGAGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705:ENSMUST00000042190:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(1.6=13.3)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCCCACAAAATTCCAGGA
R:
CTCTGCAGCTCCTTCCATCTT
Band lengths:
204-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types