GgaINT0138331 @ galGal3
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3565707-3566092:-
Coord C1 exon
chr24:3566042-3566092
Coord A exon
chr24:3565824-3566041
Coord C2 exon
chr24:3565707-3565823
Length
218 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
AGTGTCTGTCTTGCACAAAGGAT
3' ss Score
4.86
Exon sequences
Seq C1 exon
CCCAGGAGGCCCACGAGCAGATCCTGTCAGTGGGGCCCATTCGGAGGAAAC
Seq A exon
GTAAGTGTGTGTGGCCCTGAGGACAGGCATGAGGGGTCCTCCACCTTATGTGATGATCCCCTTGGTGTAAGGAGAGGTGGCCAGGACATGGGAGTGAGCACCTGGAAGGTGATGGGAGGGTTCCAGTAGGACTTCCCATCACTGGAGGGCATCCTGGGTGGGCAACTGAGGGCTGCTCAGGATCCAGCAGCATCTCTCAGTGTCTGTCTTGCACAAAG
Seq C2 exon
GATCTGACTGGTGTGAGGACAACGGTGGCTGTGAGCAGATCTGCACAAGTCAGGCGGATGGACCCCTGTGCAGCTGTGTGACAGGGACACTGCAAGGGGATGGCAAGAGCTGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000010677:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCCACGAGCAGATCC
R:
CAGCTCTTGCCATCCCCTTG
Band lengths:
158-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]