RnoINT0149344 @ rn6
Intron Retention
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46605043-46605510:-
Coord C1 exon
chr8:46605423-46605510
Coord A exon
chr8:46605160-46605422
Coord C2 exon
chr8:46605043-46605159
Length
263 bp
Sequences
Splice sites
5' ss Seq
AGAGTACGT
5' ss Score
6.58
3' ss Seq
TCCTGCACCCCCATTTTCAGGGC
3' ss Score
8.65
Exon sequences
Seq C1 exon
AATTGCCCACAAAATTCCAGGATCGCCACAGATTATTCAAAAGAGCACAAAGAACAGATCATTTCAGTGGGACCCATTAGGAGAAAGA
Seq A exon
GTACGTATGTTCCTTAGAACACACTATAGATTACTAAGACAGTGGGAGTTCGGGGCTCAGGCGTGCCTCCCTGGTGATGTGCGTCCGTCATGAGGAGGAGATGCGAGAGACACCGGTATGAGCAGACGACTGCCTGTGTCCTCCAGGAAAACCTTTTCGTTGGCTTTTGACAACTCTCTCTTCTCCCCTCTCTCTGAAGCCCCTCCTCCACCTTGATCATGATGCTATTTCTGCCATTAAGTCTCCTGCACCCCCATTTTCAG
Seq C2 exon
GGCTGGATTGGTGTGAAGACAATGGCGGCTGTGAGCAGGTCTGCACCAGCAGGGTCGACGGGCCTCTGTGCAGTTGCGTGACTGGATCCCTGCAAGAAGACGGACGGAGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126:ENSRNOT00000052293:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=PD(1.6=13.3)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCCCACAAAATTCCAGGA
R:
CTCTGCAGCTCCGTCCGTC
Band lengths:
204-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]