DreINT0163204 @ danRer10
Intron Retention
Gene
ENSDARG00000025920 | tiam1b
Description
T-cell lymphoma invasion and metastasis 1b [Source:ZFIN;Acc:ZDB-GENE-120221-1]
Coordinates
chr15:42518022-42521555:+
Coord C1 exon
chr15:42518022-42518126
Coord A exon
chr15:42518127-42521473
Coord C2 exon
chr15:42521474-42521555
Length
3347 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
AAGAATGTTTTTCATTACAGCTG
3' ss Score
7.18
Exon sequences
Seq C1 exon
GCTCACCAACTGGACGCCACTAAACACTACGTGCGCCTTAAGTTCCTCATTGAGAACCAAGTGCAGTTCTACATCCCCAAACCAGAGGAGGATATTTACGATCTG
Seq A exon
GTAGGTTTTTGGTTAAAGTGGCTCTCCCTCCCGCTGGTTGGATGCGCTCGCATTACTTTCATCCTGCTGGGACATCACACTTCATCCAAACACCTTTTCTCTTCCTCTCTTTCTCCTCGTAATAACAGAATCTTCTGTGAGGCACAAAAGAAAAAGTTGTGCTCGTGCCATTATTAGGGGTGCAAGATATTTATCGTCTATGATAATATAGTGATGATTGTGTTAACATTGTATTGGCTGACTTTATGTGCACATGTGTAAGTGTGATATAAAGAGATAGATTTATAAAACTGTTTTGCCTTTTTTGTTTTGCCAAATTAACTACAAAATACCTACAAAGGCAAAGCAGAACATTGTGCATCTCATTTCAATATTGCTGTGTTTTCTCACTGAATGAGTGAATTGAATCATTTTGAGTGAATTGAGTCAGTCAACGATTCATTCATAAAGTCACTTGCTTTGTTTCTCAGCATTTAGGGAATCACTCATTCAAATGATTTATTCTAAATGAATGAATCATTCAGGCAGTGATCCATTTATAAATCTTGCTTTGCTTCTAAGCATTTAAGATTAAATTGTTTGAATCAGTGATATATTGAATTATTAATTCAAATGATTCGTTCTAAATGCATGTCTCTTGCTTTGCTTCTTAGCATTTAGAATCGATTGTTTGAACGAAAGAGTCAGTAAAGCACTCATTCAATTGATTAATTCTAAATGGATGAATCTTTCAGTCAGTGATCCATTCTTAAAGACAGTCACTTGCCTTGTGTCTTAGACGTTTAGAATGAATCATTTAAATTAATGATTCATTAAATCAGTCATTCAAATGATTCATTCAAAATGGATGAATCATTAAGTCAGTGATCCATTTATAAATACAGTAGCTTGCTTTGCTTTTTAGCATTTAAGATTAAATTGTTTGAATAAACAATTTAGTGAATCACTCATTCAGATGATTCATTATAAATAGATAAATCATTCAGTCAGTGATACATTTATAAAGACACTCGCTTGATTTGTTTCTAAACATTTAAGAAAGAATCAATTGAAAGTATGATTTAGGGATTTAATGATTCAGTAAATCACTCATTCAAATGATTTATTCTAAATGGATTAATCATTAAGTTAGTGATCTATTTATAAAGACATTAGCTTGCTTTGCATTTTAGTTTTAGGGCAGGAATCATGTAAATGAACGATTCAGTGATCACTCATTCAAATGGTTCATTCTATATAGATGAATCATTTAGTCAGTGATCCATCCATAAAGACAGTCGCTTGCTTTGTTCCTAAGCATTTAAGAATTCATTGATTTGATAAACAATTCAGTGAATCACTCTTTAAATTGATTCATTCTTAATGGATGAATCAATCAGTCAGTGACTCATTTTAAAGACAGTTGCTTGATATGCTTTTCAGCAATTAAGAATGAATTGTTTGCGTTAATGATTCAGTGAATCACTTGTTCAAATTCTTAATTTTAAATGGATTAATTATTCCATCAGTAACCCATTAACGGAGACAGCCACTTGCTTTCTCGGCCATTAAGAATGAATCATTTGAATGAATGATTCAGTGAATAATTCTAAATGGATAAATCATATAATCAGTGATTCATTTATAAAGACAGTCGCTTGCTTTGTTTCTCAGCGGCTGTTTCTCAATATGCGTTCTTCAGCGGTCTTGCGTCCTTGTGTTCTCGTGCAACGTCATCATCAGCTGCCTAAGTTCAGTTCCAATACTCAAGACCGCAAGTACGGAGGACGCGTGAAACTTCCCGGATGTGTTCTTGATATCGAGGACGCACTGATGCTGACTTGAGCACCGAACTTGCTCTGGAAGCCCCAGAAGTCATTGCGACTGGGGGTGGGAAGCGCAGCATTTTATTTAGATTTATTATTAAAGATTCAGAGATATCACTTATTTACCTCAGGAGTTTCCCTAAATGAAACGGTGCAAGTAAACATTAACATGAACATCTTAATAAAGGAATAAACACGTTAAGAGTTGTTTGTTTGCTGAAATTCGTATTAAAATCTGTTTTATTTATATTGTGCAGAGTATATTTCTAATGTTTTTATGCAAAATATATATTTTGAAGAGGGGGGAAACAATAAATCATTGTTTGACTGCTGTAATGTTTAAATAATTTCCATTTAAAACGCGTGAAGGTCACATGACCATCAGGAAGAACGCAGCATCCCATTTCTCAAAGGACGCGTTCTCTGTCCTCGCGGTCTCCTGAGTTCGTTCTTCCGAGGACACTTGGCAAGACCGGTCTCCACAAGAACGCAAGTCCGTTCTCTGCGTTCTTGGAATTGAGAAACAGCCAGCATTTAAGGATGAATTGTTTGATTGAACAATGAAGTGAATCACTCATTTAAATGATTCATTCTAAATAGATGAATCATTCAGTCAGCGATCCATGTATAAATATAGTTGATTGCTTTCTTTCTCAGCCATTTGACTCACTTGAATGAATAATTCAATAAATCACTCATATAAAAAATTTCATTCTAAATCGATGAATCATTCAGTAAAGGATTAATTCATAAAGTCAGTCACTTGCTTTTTTGTCAGCATTTCAGAATAGTTTGAGTGAATCATGATTCAGTGAATCACTTGTGCAAATTATTATTTCTAACAGGACGAATCATTCCGTCAGTGATCCATTCATGAATACAGTCACTTCCTTTGTTTCTCAGATATTTAGAATGAATAATTGAACAAATGATTCAGTGAATCACTTTTTCAGATGATTCATTTTTAAATGGATCAATCATTTAGTCAATGATCCTTTCATAAAGACAGTCACTTGATTTTTTTCTCAGCCATTAAGAATAAATAATTTGAACAAATGAATCAGTGAATCACTCATTAATACAGAGACTTGCCTTCACCTACTGGCAGTTTTTGTGTAGTTTATGTATTCATAACAGGCCTAAACAATTCAAGACCCGCACAGAAACACATTCAGCAAAATATGGTTTAATCATTATTATTAAATAAAACTAAAATACTGAGATATGTGATTTTGATCTATATAGCTAAGCCTAAAAGCATTTTCCTTTTCTTTTAACTGGAAAACAGCCACGCTGTGATCAAACGAATGCTTTGTTTTGAAGCTTTACTCTACATCCATCATTCTTAGCAGTTGTGCAGCCGTCTTCATTTATAATGTTTTGTGTGTCCGGGTCAGACATGATCGATAATAAAGAAACATACAGGAAAATGCCACCTGTATTTCCTCACCCTCGCCCTTTCACACCATCCCGTGTGTGTGAAATGTGAGATATCAGAGTTGTGTTGAGAGGAATATTAATGAAGAATGTTTTTCATTACAG
Seq C2 exon
CTGTATAAGGAAATCGAGCTGTGCTGTAAGATCAGGAAGGTGATCCAATTTGATCGGGATGAATCCTGCATGATCGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025920:ENSDART00000169751:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219610=RBD=FE(50.0=100)
A:
NA
C2:
PF0219610=RBD=PD(0.1=0.0),PF0059519=PDZ=PU(10.7=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]