MmuINT0160089 @ mm10
Intron Retention
Gene
ENSMUSG00000002489 | Tiam1
Description
T cell lymphoma invasion and metastasis 1 [Source:MGI Symbol;Acc:MGI:103306]
Coordinates
chr16:89843253-89849754:-
Coord C1 exon
chr16:89849650-89849754
Coord A exon
chr16:89843335-89849649
Coord C2 exon
chr16:89843253-89843334
Length
6315 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
CCCCTCTCTCTGATTTGCAGCTT
3' ss Score
9.53
Exon sequences
Seq C1 exon
ACACATCAACTGGATCATTCCGCCCATTACCTGCGCCTGAAATTCCTAATGGAGAACAGAGTGCAGTTCTACATCCCGCAGCCCGAGGAGGACATTTACGAGCTG
Seq A exon
GTAATGTTTACGACCACTGTCCTCGAACACCCCGTCTGAGATAATTTTCAAATCGTGCATGTACTTGTGGTAATTGTAGCTGGTGGGATGGAATGAGCTTCATTCAGAGCCACAGAGCTGGCAGAAATAACCTTGCTTATCACAGAAATCCCGGAGTGGAAAGTCGCCTTTGCTTGTCCAAAAAGCAGGGCTGCGCTGCCACCAAAGACGTTGAAACCCACAGATGATGCTCAGATAAGAGTTGAGTCATCAGGACAGACTCTTGCTGAACACCTTTCTTTTTAATCGGTGACTCTAAAATCAGTTGGCGGTTGCCACAGTGAAAGCGCTCCAATTTTGTGCAACTTCTACCATCTTATCAGAACTGACGGGGTAAATCTTGTGGGTGTAACACCCCCCTCCCCCACCTCCCCGACCATCCATCTAATGCATCACCCAGCTTGCTGAAACTGCATTCACACAGATTCTTGGAGACATCTGTGGATGTCTGAGTCTCCTTAGAGATAGAGAACGCAGTTTCTGATCTGGGCCTGAGATTATTATCAGTTCTTCTGCATACAAATCATAGGGGGCTGGCGAGCATAAGACACCAATACCGAAAGTTCTGGGATTTTACAAAGGGCAGAAAGATGGTTTCTCAGTAGGTGTTAGCGGTTGTCACCTTGGTAACCACTGGCAGGTTCCTTTTCTTAGCAGAGCAGTGCATCTTTCAGTTCTAATAAACAGTGGTTTGGGGACCAAGGGCCTCTCTTGGGGAATGTTCTGGCTTCTCGGTTCTTAGTCATCTTTCTGGGGGACACAGAGCTGCTTGTCGTGGAGCTGGGGATAGAAACAGGGGAGTGACTCCCCACAGAAAGCAGAACTGGAAGTACAGCTCAGAGGTTCCTTTTGGAAAGAGGAACCACAGTGCAGAATGTCATAGGGAGTGGCATTTTAAATCAACTTCTTGAGCTATACTTCTTCTATTAGGAAACTCTCGACAACCGTAAGCGCATAACAGATACAAGTGGTTGTTTCCACTGGAAGAGTTATGATTTGGAGTGTTTCTGCCAGCCGAAAAGGTCACCCCAGATCTCTAAAGTATTATATTTTTTTTTTGAGGAAATATGGATTTTTCTCTTGTGGCAGTCTGATCATGTTATATGTTGGAAGAGGATGAAAGTGGGCCTGGTGGGGGGATGGTTCTGTGACTAAGAAAAGGACGGCTCCTGCAGAGGAACCAGCTTAAGGTTCTCAGTGCCCACATGGCGGCTCACCACCATCCACAATTGTAATTCTGGGCTATCTGATGCCCTCTTCTGGCCTCTGTAGTCACTGCACACACATGGTGCATAAATGTGCCTGCAGGCAAAACACTCATATACATAAATATTGCAAAGGGAAAAGGACATAAATGACCTCTCGACTCTTTAAGCCACTGTTGACTGTGTTGATGGAGATGGAGCTGGTCTCATTAACAGCCAGGAGCCAAGGTGTTCCTTCTGAGAATTAAATAGCCAGTTGTTTGTGTTCTGTGAACATACTCAAGGAGTCCTTTCCATGCCAAAGAAGAAAAGCCTTAGCTCAGCACTACAGTCCTCATCTGTAGCCCTAGCTGCTCAGGGGGCTGAGGCAGAAGAGTTGCATGACCTCTAGGAGTTCAAGGTTAGCTTGGAGAACAACACAGCAAGATGTTTCTTGGAAGAAAAAAAAAAATCCCATGCGTAGTGTGGTAAACATCTAAAATTCCTACACTGGGAGACTTAGGCAAGAGGATTGAGAGATAAAGCTTGGGGCTAGCCTGGGCTACAGTTTCATCTCATCTCGGTGAATAACTTGGAGTTTCATGATCAAAAAAGTCAGAGAGGTCAGGCTGATTACGCTGCAAGAAGATAGTTTAGTTTATGCCTTATAATTTGTGAATTTTACAAACAGTAAATTGCAGGGCTCATAGGCAACAAGCTTCTATTTCTTGTATATAACAGGCATGTGTGCTAATCAGGTCCTGTATATACCAGGAATGTATACTACTCGGGTCCTATACATGTCAGGCATGTGTGCTAATCTGGTCCTGTAGATACCAGGCACGTGTGCTAATCAGGCCATGGCTTTAAAATGTTTATTAGTCATATACTATTGTTATGAACAAACTTTTTTTAGATTTATTTATTTTACTATCTTATGTGTATGAATAAGACTGGAGTCACAGACAGTTGGGAGCCGCCCTGTGTGTGCTGGGAATTGAACTGGGTCCTCTTCAAAAGTATCGAGTGATCTTAACCATTGAGCCAACCCTCCAACCCTCCCCTAGTCACATATCATATTTAAGCTATGGATACGGTGTGGCTTTATCCAGTGATGACGATGGAGTGCTGGTGAGCCCAGCTCAGCCTGTTCAGGTCTATAATTGTTATTATGTATGTGCTATAGTTAAGGGGAACAACCCGTAGGTACAAAGGGACCACTGTGCTTTCTCTCACCCTTTGCAGTGGTCTCTGGCCCAGAGATCCCCAGGGAAGCAGTGACCAGGGTCGTGCTTACGTCAGCACCTCCATCTTACCAGGCTCTCTAAGCTTCTTGCGTTCTGGGCGGCTTTCGTGCCTGACGAAGCTTCTTGACCCCTTCCCAGAGTAATGCTTACAGTCACGTGAGACAGGACATACAGACAGACCTTCCCATGGCTTAGTCATAGCAAGATGCTTAGCAAAACTCAATTTTAAATGATAGGTAACATGTTATGAGCTCACGAAATTATAAAACTTAACAGTGGATGTAGTAGCTACTGCTGCTCAGAAATAGTGGCAAGTATAACTAATATCCAGAGGTATTAATAGCAACTGGGATTTGCTACTGAGATGGCTTTAGTACTCATGAGGAAGCCACGGGCACTCGTAGTGTTGTGGTCCGGGTTGCCTACGTGCACCCACGGTCAGAGAAGATGCTGGGCCGTCTTCCGTAAATGTTCTGGGTATCTTTTGCTTTCTGTTCTGAGTTCACAGGCCCCTAGAATCATCTCAGGGGTCCCTGTTCTGCAGCCCTGCTTTAGAGCATTCCTCGGGGTGTGGGGTCATGCTAAGGCAGGGCCTGTCTGGGCACAGAGTGCTTTCTGAGAGCATATTTGTTTTCTTGCTCGTTTCTGAGCAAGCAGCAGGCTACACGATATTAATAAGCCCTGCTACCTCCCTGCATGCTGGGGCACTGCTCTGCAGGAACCTGCAGGTGTCTCCAGCCATGCCCTCATATATGACTCCCACCCCAACCCCAGATACTTAATTCTGTCCCATCGATAGCAGAAAGTGAGTCCTGGACTTGGAAGATCTTGGAGAGTAATGAGTATTCATTTGTGTGAGTGAGAAGGGAGTTCTCTGAATATCTACCAATAGTCATTGTCTGCCTGCTTTGCTGATTATATTAATGTAAATGATACCCATTTGGCTATTTCTTCCTGACTAGATAGTTGTTGGAAACAGTCCATGGAATGGCCACAGACCTGGGGTTTAGTCTGTAGAGACAATAGCTTTCCAGATTTCACACTAAATGAGATCTTATTAAAGTGACAGGGGAATAAAATGTGCAGCCAAAATTGATTAATTTATTTATTCATTCATCTCGCAAATATTTACTTAGCGTTTCTGTGCCAAGAATAATCTCTGATCCTCACAGGGTATGTGCCAGAGGTGGGGGGGGGGGGGTCCTGTTTCTGGAGGAGCCTCTATTCAGGTTCGCAGAAATACATGTAAAAACCTGTCACTGGCAGCAGGTTTTCAGGCTTGGAGAAGCAAGAAGTTAGGGAGAGAGGCACGGTGCTGGCATGCTGAGGTGTGAGGTGAGTCTGGGGGTGAGGAGAACAAGATGTGAGTCTCACGTGTTTTACAGAAAAGTGTTTCAAGAAGGTGTGACATGGGTCTGGGGAGAAAGGTCAGTTGGTAACATTCCTGCCACAGAAGCCTGAGCTCTAGACTCCGGTACCCCTGTAAACGGTGGTACAGAGCCAGGCACCTCTAATCCCAGTGCAGGAGGCAGAGACAGCGGGAGCCTCAGACCTGGCTGGCTGGCCAGCCTGGCTGAATTGGCGAACTCTAGGCTCAGTAAGCGACGCCATTGATAAAATTTGAAAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTCTCAGTTCTTAACTTCTCACGCAATACAAAATGAAGACAATCTGCCTATCATTTGTGTTGTATTAGGTAGGTATCAAGTGCAATCTAAAGACAATTCAAAGCCTGTGTGACATAGCTTTTATGCAAATACCACACTGTTTCCCATAAGAGAGTTGAGCACCCATGGGTTTGGAGATTCTGGGGTCCTGGAGATCCTGAAACCAGTCCTGTGAGTTACCTAGTAATGGCAACAGCTGGCCTCTATTGTAACAGGCTCCTTGAGGTTGGTGTATGCCAAGCGCACTCTAGGACACGGGACGACTCCCTGCTGGCTAGGGTACTGTGGCTAAGAGGCCTTTGTGGCTTAGGCTGGCATGGTCAGGGGAGACGGGGAGACAGGACTAACAGCATGTGGTTAGAGCAGTGTTAAAAACTTATGATGTTTCCCCTCTGGGGCCTGGGGGAGGTGCTTCAATAGTACTTTAAACGTGGAACTTCAATATGTGTGCCACTTGCCTGTGCATAAGGTGGCCAGCTTTCAAATTCCCTAGCCCAGATCCTGTGGTTTCAGAAAACACATTTTAAGACACAGAAGTTTCCTGTATTTTTTTACTTTTTTTTTTTTTCCTTAACCTGGCCTGAGTCTCAGTCAGCACAAGAGTGAGCGTGTGGCCCCGAGGCTGGCTTATGTGACACCGAGACAGTGGACACAGTGGAGAGCAGAAATTCTGAGCAAAGTATCCCACTGGCTCTCTGCAGAGATGGTCAGAACTAACGGGTCTATGCTGTCACCTAGTGGGAAGGACTGGCTGCTACACATATTTAAAAATAAATGAGCAGGGCTCAACCCCAGCAGAGATGAACACTGTGGTATTGAGTGAGCATGGTGCTTGTCCTGCCATGTCTTGTCAGCTTTCTTTAAATAATTCCGTATTTGTAATTGTAGTGGCTATATTTTCTGATCTTTAAATCACTGAAGTCCTCTAATTGGAGAATTTAATTTTGTGAACTGAAGTGTCTAAATAAAATCATATTGAATTATGCCCCCGGACACCCAGGCTGTACGGCCAGTGTTCCTAGCTCTAACCCCTATCACATTGTGTCATAGTATACCATTAAAAAAAAAAGACCCGTGCTTTCTTCTTGACTGTATAAAATGACATCCTGAAGAGATGGGGCAGGGGTAGACGTCACCGAGGTCCGCTTCAGTGACTCAGGATGCAGTACCTATCAAATTCTATGGCTTGAGATTTATTTTCATTTCCAGATCAGTAAGAGTTTGCATTTGTCTTCAAATTTGGATTTCAGCTATAGGTTTTTTACCTAAGAAGGCTCATCCTCCTAACCTCAGGCCTCTTTGGGTTTCACACTGGGCTGGGAGTCACCATGGTGGGACACAGAGAGAGCCATATCTCTGGGGCTTGCAAGACTGCATTTAGACCCTGCCCAGCCCACCCTGGCTTTACAAACATGTTAGAATACTTTCTCACCAGCCTTAGCGCCCTGTTTGTGAAATGGACGTTGTAATTGTCCCAGGATGGAATGATAAGGCACACAGTTGAAATTCATGTCTTGTGAGTTAGCTCCAGATATATGGAACTGCACTGTCAGTTGATTTAAACATTTTCTGATGCGCGAGCTATATAATACTTTAATCTTGCATTTATACAGAAACACATTCTAGACTATGTTGGGTTTATAGATGGTTGGTTGATTTGTGTACTTACTTTTCTTTATGATTTTGTATAGTTGAGTGGCTAACCGAGAATCTCATCACACAGACAGTCTGTATCTACCAGTTGATCCTGCTGTGGATTTCCTCCTGTGGAAGTGCTGTGTGAACAGGCAGAGATGTCTAGTACTGTGCAGGCCTTCACTCAGCATATTTATAACCTCCTTTTGATTTTGACGAGTCCCCTGCCCCAGCACTAGAGGGTTTAATGATGGGGGCATTGTGTTTCAGGTCTGTGATGAATTTAGGGTGCTCTATAGAGTGATGTGCATGTGGAGAGAGCGTGGTTAGAAGCAGCCTGGTTTTCTAAGCTTAGCTGAGCGTGGTGCTGAGAACTGAAGGTTTTTCACTCAATAAAAACACTGATGTAGCATGAATTTTTGTTCAAGTATCAATTATGAAAAAGCAAATTTACAAAATGCTGATCTGTCGTATTTGCGATGGGCCCCTCACTCGCCCCCCTCTCTCTGATTTGCAG
Seq C2 exon
CTTTACAAAGAAATTGAAATCTGTCCAAAAGTCACCCAGAATATCCACATTGAGAAGTCAGACGCGGCCGCTGATAATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002489:ENSMUST00000114124:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219610=RBD=FE(50.0=100)
A:
NA
C2:
PF0219610=RBD=PD(0.1=0.0),PF0059519=PDZ=PU(17.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types