GgaINT0116815 @ galGal4
Intron Retention
Gene
ENSGALG00000015842 | TIAM1
Description
T-cell lymphoma invasion and metastasis 1 [Source:HGNC Symbol;Acc:HGNC:11805]
Coordinates
chr1:103832732-103836211:-
Coord C1 exon
chr1:103836107-103836211
Coord A exon
chr1:103832814-103836106
Coord C2 exon
chr1:103832732-103832813
Length
3293 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACG
5' ss Score
6.15
3' ss Seq
GTATCTTTTTTTCCGCTCAGCTC
3' ss Score
6.76
Exon sequences
Seq C1 exon
ACACACCAGCTGGATCTCTCTGCTCACTACCTGCGTCTTAAGTTCCTGATTGAAAACCAGATGCAGTTTTATGTACCAAAGCAAGAAGAGGATATCTACGAACTG
Seq A exon
GTAACGCTACCTACTAAAGCAAAATTAGATGACACTGTGTAGAACGCTGTTAATTAGTGTTCATTTGGTATTTGTAATATGCAGTTATGCTTTTTAACTTGCAATTATGGAGCTGTGCAGGCCATTGCAATTGGCCTGCGGTAAGGTAATCCCTCCAAACATCTCATCTTGAGGAGAGAGCTGGTGTTCCACTTACGTTTGTGCACTTACGGCTCTGTGTGGAAGAGAGAAGAAACAGCCACTGGTAATGGGGTGAAGGTCATGGTGGTGTGCATTAAAGCTTAATTTCTCTCAAGGCTGCCTTTTCCTCTTGTTTGTATTTTCCTTGTTTGTTTTAAAGGCGTACTGTTAAAACCTCGATGCTTCTTGTTCAGGTCACTTTGATTTTTTTAAGGGAGAGAGCGAGCGTGCAAGTTGTTTTTCGTTGCTGTCGCTTTTGGTGGCTTTCTCATTTTTGAATGGGAAAGTAAATGTTGAGGTTAAAAAGCTGTGTGAGTATATACATTCCTAATTGCTTCATTTGGAAGTCTTCCTATGGTGAATCTCAAAAGCAGACTTCAAAGGAATTTTGAAATCAGAGATTAAAAAAACAGACCAAACAGAATTCGTGTCATGCTTTGGCTCTGTGATTTTACACGTGCATGCTGTAAAGCTTTTCAAAGTCCTTTTTATTGGTGGCTGTTTTATTTATAAAAAGTAAAACTTTGCCACTTATGGATGCTTTTGTTCATTTACTAAAGAACTTCTACGGTTTGCCATTATCACAGTTAAAAAAAAATACTGAGAAAGTACTAAGAGTGGGAAGTAAAACGTAGCTGTGAAAGATTAAGACACACAGGAGACAGATTTTGGCTTTCATTGCATGGGAGGGCCTTGACTTTTTTATGTGAAGGGGATATAGGATTGACACAGTCATCAGTTATTGTTTATTCTGAAGAAAACTGAAATTAAACCAAAACTCTGTGGTCAGTAGCACTGTGCGTGTGCTGCAAGATTACAGTACAGATAGGATCGTGCCTAATGTAGTACCGTTAAAGCAGTGTGCATTTGTGTGTGTGCTTGTGTGTGCCTGTGTGCTTGTTTCATGAGCAAATGTGAGTTACTTTTATTCAGGTGTTAAATGAGATGGTTCTCCTGCAATGTGATAAAAGTAATGTCTCTATTTCTGTGGTCTCCCAAGTAGTGTTTATAACAGGCTAGTGCTGATGTCATCTTGCCAGAGCTACCTTCCCTCTACTAAAATGCTTTTAAAATACATTACTGTGGGAAAGGTGATTTCTTAGGATGATAATCCTTTCTCTTGAAGAATCTAACAGATGATTTAAGTAAGAAGCTGAGATTAAACAACTGTATTCCATTCCTTTCCAAAACATTTATGGTGATGCTTTGTGTTCCGACACAGCCTTTCGAAAATTCACGTGCTTGGTTTATTATGTGTTATAAGAGTTACTAAGGGCTAAGGGACAGCTATTTAGCATTAGGTGCTACACCAGGCAGTTTAAGCACCTTTTATTGTAAATGAAGTGTTGGAATGCTTGGGCTGGAAGTTGACGTGCCAGACTCCTTGCTCTGGGTAGGATATTGATGGCACTTTCAGATGGAAGAAGGAGACTGGAGGCCCCTCTGAAAGTCCCACTGGTAGGATGGGGTGAGGCTGGAGGCACTGGGAAGGGATTCTGTGACAGGACCAAAAGCGTCAGAGGAAAGAATGCAAGCAGGTGAAGGGCTTGAGGAAATGAAGGTAATGATAAATATCCCCAAACTGCCATGAGAAGCACCAGGGGCAGCAAAGGGATTGAAGTGGATGGAGGGGGCATCACTGCCCTTGAATGCTAAATTCTCCTTGGGATGGCTGCAGAGTTCAGACAGTTTTCGTTCTGAAAACAGTGCAATTTTCACTTGTTTTTTGCCTTCTCCTCTTTTTAAAATGTTTACTAAAATCTGGTTGAGATTTTGTGAATGTCATTTGACTCACGTTCAAGTGCTGAATAATATGTTCCTATCTTTGAAAGCTGCATTTTAAAAGTGCTGCTAGCATGGCATCCTCATTGAATTTTACATTTATCTTGCTGTACACAGCCACTTAAATGGGTATTCATCTGTTCCATTATGCCTAATATTTGCATTAAACAGATGAGTAAGTGTTGGTAGAAGCAGGAGAGAAACCCATCCTAATGAGTTACTGTACTTTTTTAAGGGGATGGATTAAATGCTTCAGTCCAAACACTAATGTCACTTAATTTCAAAGCGTCCCTTAATTATTGTGGTTGCTTTTTGACAGCCTTAACCGCATCGGCGGAATTAATACTTACCTGTGAGCTCTCATTCTTCTGAGGGTATGATTTTTTCCAAAGGTGGTTTTTCCAGAGGTGGAAGGATGGCTCGTTACTGAAGTTCTAGCTCGTCCTATGGAAAAAACAGCTCCAAACTTGTGCACTGACCACGGCTTTCGGTCTGGCTTTGGGGAGGTTAGGGCTGACTCCCAGAGATGTCAGTTCAGAGAGACTAACTGTCTGAAGAAATGCCATTTCCCTACCTGGGTTGTTGTGACAGGCCCCAGTACCACCCCATTTGTTAGGAGCTGAGCAGCAGGGCTGGGACACAAGAGTAAGTAGCGCGGAGTGAAAGATTTAAAAGCAGAATTCGTGTTACTGACAGCATAAGCAGAGTACGGGGCTGCAGATGGGGGACTGCTCAGCTCCTGAAAGGCAGAGCGAATCGCTTGGATGCTGCCCAGAGGTGTGAATTGGCGCTGCTCTCCCAGGAAGGATGTTAATGATGATTTCAAAGGCTCGGGTAGAAATAAACATTAATGTGTGAAAGGTGAGAAAGGAGCTGCATTTAAAATCTGATCATCTTCAAACAATTGAGAGATGTTTTTAAGAAGGAAAATTCCTACTTAGAATTTTAGTGCTATAAAATAATCAAATTCCCGCGATGTCTTAATGTAAATAATATATATGCTTAACATTAAATGATAACTTCCCATTAAATACAGAAGGAGGAATGGAAGTTCTTTTTCTCGTGCACTCAAAATGGTATTGGTGGAGTGAAAGAGGTGTATTATTACTTTTATGTTGGCAGTAGCAAAGTGCTACTTATTCCTCTTCAGTTTCTAACAGTCAAGCATAGCAACAAAACTAATGGTTTGTACATGTGGGGAAAGACTAACTGATACGTAATGACCACGGTCTGCTTCTCCCTCCTCCTGAGAAAGAAGTCTGTTCAGTATGATTGCAGTTAATGTGTTCTCCCACAGTAACTTGTTTGTGTGTATCTTTTTTTCCGCTCAG
Seq C2 exon
CTCTACAAAGAAATAGAAATCTGTCAGAAAATTACGCAGCATATTCAGATAGAGAAGTCTGATACGTCCTCTGATATTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842:ENSGALT00000025542:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0219610=RBD=FE(50.0=100)
A:
NA
C2:
PF0219610=RBD=PD(0.1=0.0),PF0059519=PDZ=PU(16.2=46.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]