DreINT0170984 @ danRer10
Intron Retention
Gene
ENSDARG00000042508 | ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1473]
Coordinates
chr9:3944429-3949582:-
Coord C1 exon
chr9:3949477-3949582
Coord A exon
chr9:3944530-3949476
Coord C2 exon
chr9:3944429-3944529
Length
4947 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
GTTTGTTTTTGTGTGCGCAGGTA
3' ss Score
9.75
Exon sequences
Seq C1 exon
ATCAGCTGTTTCACGTGCTGGCCATGCACATGCGGCTCTACAGCATAGACTCGGCATACAATCCATGGACCAGACTCACACTGAGCACGCAAAGCAGAGAGAATGA
Seq A exon
GTGAGTGCGCTCGCGCACACACACACACACACACCCACACTTGTACAGTTATCTTTGTATGGACATCATCAGACATTAATTTTATACTCTAGAGACTGTATGCAGGGTTTGAAATGAACCATTTTGCTTGGTAGCACCGGTGCTCCCAACTTTAAAAATGTAGGCGCACCAGTCAAAATTTAGTCACACTCACCAATTATAAGCACCGTTACTACAAGTTTTATACAAACATATTCATTGCATTTGAAATCAACAGTAATCAAACTAACAAGCAAAATATATATGCAAGCGTGAGGAAAATATGTCTCAACGAAATCCCGTTATCACAAGAAAATAGATTTTTATAACATAACTGAGTGACCAAAGCATACACGGAGCGCTCACCGGCCCTGCACACACTGCTTGACATGAATGAATCTGTTAACGATATAACTGTGCTGTTCTCACGGGTGCTGTCTGATATTGCACTGATGTGTTTGACATATACTGTACCTTATTATATGCATACGTCATAGTAACAGCAATACCGGTGTTTTCATGAGTAGTGATATTAGTTTAAACAGAAATTGAGAAAAAATTTATATATATATATATATATATATATATATATATATATATATATATATATATGTATATATGTGTATATATATGTATATATATGTGTGTATGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATGTATATATATATATATATATATATGTGTATGTGTGTGTGTATATATATATATATATATATATATATATATATATACACACACACACACGTACACACATACATGTATATACACACATACACATATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAACACAAGGGCAAATAATTCTGACTTCAACTGTACTTCTAAATAATTCCTGTATATATTCATATAATTCCAAAATATTGCTCTTGCTGGTTTTCCAGTATTGTTTCTTGACTGCTTCTGCATCTTTCTGAGGTGGGGAGAGAGAAAGACTTGTGCAAAAGGGGTTTCCATAGATACCAATAACTGCTGCATCTGGCAAATTATGGTGTGCAGCACTACATTTGATGAGTGCTGCGCTTTATTTTGAGGCTTTATTGCTGTATGGAGGTTAGCACTCAGAGCGTCTCCTGTTTAAAAGCCACTTAACACTCCCAGGCTGGTTAAATGGCCTCATTTCTCTAGCGGTGGAGAGGGGTTTCAGCTGCTCGTCTCTCAGGACTGTTGCAGCTCTGGACTTGCTGTGGTTATAAATACCTTGTTAGGGGCTTTTGAAGGAAATCTCTGTCACTAGGACCCTCTGGCACTTTAGCATAGCTGTATAAACCGTATGTATAAATATAATCATTACAATAAAACCACTACCATTCCCCTTCTTTACCTGTGTGTAATCACTTATCAAACACAATCACAATCCTTATTCAAACTGGTTTGATCCATCCCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTTTTTTCAAACTGTTTTTATCTGTCTGTCCATCCATCTTCAAACTTTTTTTGTCCGTCTGTCCATCTGTCTGTCCATCCATCTATCAGTCTATCCGTCTATTTATTTGTCTGTCTACCTAACCGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTGTCTGTCTATCTTTTTTCAAACTCTTTTTATCTGTCTGTCTGTCCATCCATCTTCAAACTGTTTTTGTCTGTCCGTCCATCTGTCTGTCTATCCATCCATCCATCCTTTCAAACTGTTTTTTCTGTCTGTCCATCCATCTATCAGTCTATCCTTCTATTTGTCTGTCTGTCTTTTTGTCTATCTATCTAACCCTCTATCCATCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCCGTCTATCCATCTGCAATGCTTGCTTTAAGGAGAGAATTACTTTAGTAGGGCTGCAAAAACGAATCGATAATAAAATTCATTGTCAACGAATGCCGTTATCGATTTGTTGGGCTGCTCACATAACGACAAGATGTTCACGCAATAGAGGGTACAAACTGTATTTGTTTACAGCAGGGGTGCCCAAACTTTTTCATACAATGGCCCAAAACCCAAATATGATTTAGAACCGAATGTAAATATACTAAAATATATTACATTAAAGTTGCCATGAGTAATATCCTAATTTATTTAAAATCGTATTAACTAATGCAGTATGACATTTAAAGTGATAAAGTATTGCAATAAAAGCATCAACACTCGCATTTATAACAGTGGAGTTTAATGATGAATACATTAGTCAAGCGGACTCTACCTTTGCCTTGGTTTGTCCTCTATCCGTTGGGTGACAGTATGTGCATTTAAACTAAATCTGATTGGTTTACAGCATTTATGAAACATTTAATTTCAGTTAGCTTTTAACGATAAAACAAACAAACGAAAGGTTACATTAGATTAGAAATGACAATCTCCAAACCATCTCTATTATTCTGTCTCTCTTTCCAGATGGGATGGCGGGCCAAATCAAAGGTTACCGCGGATTTTAGTTTGGCCATCTCTGTTGTACAAAGTGTGATTCCAATTGGGTTAAAAATGGTTATTATTAGCGGAAACTGTGGAACAACCACATGCTCGTGCTGATCAATTTCCTTTTTCTGTTGAGCACGAAACATCATATTCTGAACAATGTTGAAAAAAAGCAACCATTGACATCCATAGTTGGAACAAAAGAAAAATACTGTGAAAGTCAGTGGCTGTTGCTTTTTAATATTCATCAAAATATCGTCTTCTGTGTTCAACTTAACGACAAGTATAAGCAAATGACCGAATTTTCATGTTTGGGTGAACTATCTCTTTAAAGATTAAACTTTATTATTATTATTATTATTATTATTATTATTATTTTATTTATTTATTTATTTGTTTATTTATTTTATATATCCTTTATGACCAATATAAGCACTTGCTTTGATATTTCATCATAAGGTATTTATGTTTTAATTTGAGCATGTATTCCATTTAATGTAACATATTTATTGCTGTAGTATTATTTTTGTGTGTGTGCATATAATGAGTGCGCATTCATAGTTCAGCATTGTGCTCTAATGGACTGCACTCAGTCCCACACACTCTGGTAAAAGAATAGATATTTACTTAAGTAGTATCTGCCTTTTATATTTTGTTTGCCATCTGTGTAAATAGTCCACCCACTGCCTATTAACGCTAGAACTCTAGAAAAACAAGATTTGACTCAAGGTCGCCCACAGAAATGGTCCTGTTATTTCTTTAGTATCTTGTGCCTTTGGGGGAAAAACATTCAGACAAGATTGTCTGGATCACGTAGTTTGGAGCAACCAGCTTTAATATACTTTACTTTTTTTTTTTTTTTTAAATCAGTGTTTCTCAACTACGTTCATGCAGGACCACCAGCACATTTTTCATGTCTCCTTAACCAAACCTGATTGAGAGCGTCAGCTTATTAGCAGAGACTGAAAGACATGTAATGGGTGTGACAGACAAAAGAGACATCCAAAACATGCAGTGTTGGTGGTCCTCGAGTAGAGCTGTGAACCTACACTAGTTTCACGGTTCGGTTCGGTTACGATTATCATGCCATCGATTCGGTTCAATTCGATATTTCGGTGCATCACGGTGCATTGACGGTGCTTTCCATACACAGTTTTATATTTTCTTCACAGCAGTATTTCTTGTATTAAAATGTATGAATATATTTATATTTATATACTATTTGTATTTTGTAATGCAATTTTGTCATTTAATACAAACAGTCAGACATATAAACTGTAACTTTAAACAAAACGAGCATTTAGCAAATAATATAAACAAATATAAATATCCAGCTCAATTTCTGATCCTTGTCTAGTTCTCTTACACCCCCTTGATTGGTCACACCCTCAAAAAAAAAAACGGTTGTGATTGGCTCTTGCGCGCTGCGTTCTTCACAGATGAGTGATGCTGATAAGCGGCAGGCGGCAGCGGCGATCTCACAGCTGATGTATGATTCATTTTGACACCCCTGTCCTCCAGGAACGTGGTTGAGAAACACTGCTTTGAATTAGTTTGTTAATTATTCATTAACATTTTAATTAATATACTTTAAATATTAGCAGTGAATACTGTGAGAAATTGAGGTTTCTGTTTAATTGGCAGTCACAGTGTATAGAAATGCACCAGAATTAGCCAAAAATTGGTTGTCCTTGGATGGTAAAATGGGCTGCCTAAAAACAAAGTGGAAATTATACAATGAACAAAGCAACTATAAAAGAGAATTAAGATAGATGTAGGTGTACAAATCTTGATAAATTATATAGAGCAGTGTTTCTCAACCACATTCCTGAAGGACCACCAGCTCTGCTCATTTTTCACGTCTCAAACGAACACACCTGATTCAGAGCATCAGCTCATTAGCAGAGACTGAAAGACCTGTAATGAGTGCGACAAAGGAGACATCCAAAACATGCAATGCTGGTGGTCCTCCAGGTATCATGGTTGAGAAACACAGATATAGTTTATACAGATAAAACAGTTGTTTGGTGATTGATTTGTGTGTCTGCAGTGTTTCATTGTTTGTTTGTTTTTGTGTGCGCAG
Seq C2 exon
GTACTGTGATGAAGAGCGTCCTGAGGTTCCCATGCTTTTCCGAGACGTCCCATCCCTCCTAATCATCTTCATCCTCACCATGCCTCAGCCTTTACGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042508:ENSDART00000129091:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]