DreINT0171875 @ danRer10
Intron Retention
Gene
ENSDARG00000092722 | unc5da
Description
unc-5 homolog Da (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-080908-2]
Coordinates
chr21:16275552-16277505:-
Coord C1 exon
chr21:16277362-16277505
Coord A exon
chr21:16275656-16277361
Coord C2 exon
chr21:16275552-16275655
Length
1706 bp
Sequences
Splice sites
5' ss Seq
CTTGTCAGT
5' ss Score
-0.42
3' ss Seq
TTTTTTATTTTCTCATATAGACC
3' ss Score
9.61
Exon sequences
Seq C1 exon
GACTGAAGATCCGCGAGGTGATGATAAATGTGTCTAGACAGCAGGTGGAGGATTTCCATGGACCGGAGGACTACTGGTGTCTGTGTGTGGCCTGGAGTCATCTGGGCACCGCCAAGAGTCGCAAAGCCACCGTTCGCATTGCTT
Seq A exon
GTCAGTATAATATAAGTTTATTTTTGTATTTATTTATTTAATTTTTTTGCTAAATCACTTTAGAATTCAACCATTTTTTTTTAAGTTTGATTGAAACTGCTGCATCACATGGACCTCACAGAAGTACTGAGATTTTCCAAATAGGTTTTTGAAACACATGCACCTTTTATTATTGCTAAAAGGCTCAGATAGTAGTGTTAGTTTTATATATTTTTTATCCTGCTATAATATTTAATAATACTTTTGTTTTGGTTTTCACTTTTCATTTTGGTTTTAGCACTTTTTATGTGCTTCTTTGAAAATTTTAAATAATTTTCTATAATAGTTTACTGTTATTGTTTTTCCTCAGTTTTATTTTTAGTATTTTAGTACTTCCAGTGTGCTTTCAACTGTTCCACTGTTTAGCCTTTCTATGTGTAATTTTATATATAATTTTATTAGGATTTATATAAACAATAATGTTTTCTCCTTTTTTTTGGGGGGGGGGGGGGGGGGTATGAGATGTATATGCCATATGAAATCTGAATAAATATGCTTTTCATTGATGTACGTTTTGTTAGGATGAGATAATATTTGTCTGAGATGCAACTATTTGAAAATCTATAATCTGAGGGTTTAATTATTGGATATTTAAGATGTATACACTATATGAAAACTGAATAAATATGCTTTCAAATGATGTACATTTTGTTAAGATGAGAAAATAATTGGCCAAGATGCAACTATTTAAAAAAATCTGTAATTAGAGGGTTTTCTTTTTTAGATTTTTGAGATGTTTACAACATGAAATCTGAATAAATATGATTTTCATTGATGAATATTTTGTTGGGATAAGATAATATTTGTGATGCAACTATTTGAAAATCTGAATAAATATGCTGTAAATTGATGTACATTTTGTTAAGATAAGATAATATTTGGCCGAAAATACAACTATTTGAACATCTATAATTTGACGGTCACATATTTGGATTTCTGAAATGTATAAACCATATGAAAACTGAATGAATATGCTTTTCATTGATGTACATTTTGTTAAGATAAGATAATAATTGGTCAAGATGCAACTGTTTGAAATCTGTAACCTGTAATCTGAGGTTTTCATGTAAATGCCATTTGAATACTGAATATATGTTTTTAATTGATGTACATTTTCTTAAGATAAAATTTGGCCAAGATGCAGCTATTTAAATATTTGTTATCTGAGAGTTACTTTTTTGGATTTTTGAAATATACAAAATATGAAATTGGAATAAATATGCTTTAAATTGATGTACATTTTGTTAAGATAAGAAAATATTTGGTTGAGATGCAGCTATTTGAAAATCTGTGATCTGAGCGTCACATTTTGGGATTTTTGAGACATATACACCATATGAAAACTGAATAAATGTGGTTTTTATTGCTTGATAGTTTGGAAAATCAAAAAATCTAATTATTGAGAAAAACTTTTATGTCCAAATTAAGTTATTAGCAATTACTAATTAAAAATATGCTTAAATTGCCAAAAATATATCTGTGTGACATATATTTGTGGTCCATGCTCACATGTATTGCTTTAAATTAAGGCCTGGATAGAACCACCCAAAATTGATGCCATTGCTTTAATGTGATTAGCTCCTTCAGGACAAGAATTGATCAATGAGTCAATCAATGCGTAAGACAGCAGCATATGCTACCTGTGCTTTTTTTATTTTCTCATATAG
Seq C2 exon
ACCTGAGGAAGAATTTCGAGCAGGAACCGCAGGGAATGGAGGTGCCAATCAATGGCATGATCGTCCTCCACTGCCGTCCACCTGAGGGAGTGCCTGCAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092722:ENSDART00000136435:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGGTGATGATAAATGTGT
R:
TGCAGGCACTCCCTCAGG
Band lengths:
231-1937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]