DreINT0172501 @ danRer10
Intron Retention
Gene
ENSDARG00000027501 | usp20
Description
ubiquitin specific peptidase 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1219]
Coordinates
chr5:32721836-32725078:+
Coord C1 exon
chr5:32721836-32721938
Coord A exon
chr5:32721939-32725009
Coord C2 exon
chr5:32725010-32725078
Length
3071 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAC
5' ss Score
3.23
3' ss Seq
TTCATATACTGCTGGTTTAGAGC
3' ss Score
4.18
Exon sequences
Seq C1 exon
TTAAATAAGGAGTTTCAGGCTGAAGAAGCTCCTACCGTCATCCTTTGTATAAGCATGCAGTGGTTCAGAGAATGGGAGAACTTTGTCAAGGGCAAAGACAATG
Seq A exon
GTACACACTCATGCAAACTCGTATACTGTAGTAACATGCATGTTAACAAACATGGATTGCTACTCATTTATGTTATTCGAGATAATATGCAGCAAAATTAAGAAAGCCAGGTCTTTGGTGTTTAGTTCACTGTTCTGAGGGAGGATTTTAAATGTTTGTTTATATTGTTAAATCATTTGGACTTTATAGTATATTTATAGTATGACAGTTTATCATACTATAAACATTTATAGTGTGATAGTTTGTAGTATTATAGTTTAATATATGAACAAATGTCAGTATGTAATCATTATCTGTAATCAAAAACATTATCATGTCTTACTCCTTACAATGCCACAACTTTTTCTGACAACATGTAAACCAGTATGATGGGTGAGAAATATGGTTCTCCAATGACTGATTGAATTTCAGTGCTCTCTTCTAACTTTTCTCTCATGAGTCCATCACAGCAAGTAGCAAATGACAACAACCCAGTCTATTCCTGAATTACTAAATTAAACCTTACTTTAATTCGTTTGCATGATGGATGCATTTATAATACACAAGAAAAAGAGAGTTTCATGCTGCATTTAAAGGCATAGTTTAGTTATATGTTATAATCCTGTCATCCTTTACTAATTCTTATTTATTTGGTTTTGGTCTCTATTGGTATTTATTATATGGATAAAAAAGTTTAATTTTTAAAAATGTATTTTTTGCTGTTTTGAAGTTAAATGGAGTGAATGTGAGTATAGGATACAATTTAGATTTATAGTGCCACTATTATACTGTTTTAAAGGGTCCTATTTGTGTTTTAGACTCCTAAAATAGGTTTATATAAGAGAGGCTCATTTCTGTTCTTTTTTCCAACCGACAACCGCTGCTCTTTAACCGAATATTAACCGTTAACTGGTCAGATTAATATTAAATTATTATTTAACAAAAAAAATAAATAATAATAATTGACGTGTCTATTTTGTGTCTGACACATTAAATATTGCATTTTAAAATACTGATTTATTTTAACGTGCAAACATATTAACCACAGGACATATTAACAACAGAACATCTTCACACACCTGCAGTGTTTCCAACAGCAGAAAAAAACAAACCAAATAAAATAAAAAAATTAGGCCTGCCCTAGATATTTTTCACATAAATTACAAATTAAGATTACAAAACGAAAACACTGACTAAATCCTTTTTAAGAACCAGCATAGGTTATTTCTTTCCCATTATGTTTTTTTTCTTCCATCAAATACAAATAGCAGGCAACCTCAAATCGATCACTCAACGGAAAATATGCATTTAAATAATGCTCCCCTGTTATAATTATATCACAAACCTCTGTCAACTTTTTAAATAGAAGTCATTACTTTAAAGATTATGTCTTGAGCGTCTATTTTTTTCCTCTCACTCGCTGCATGTGAAGACAGACAATGACAAGGCTCAAATGTGGACTTTTAGTAAAGTATAGGCTACTATAGCATATAGCAATTTTGTTGTTTACTTATGTTATTACATTAATTGCATACATATTTTATAAGCTATAAAATGAAAGCCTCAATTTTGTGCGGAGTTATCATTATGCACAAATCAAGAAAATATTCGGATTTGTTTGATTCATAGATTATGTAAGCTATAGATTATGTAATATAAAAAATGATATTTTATAAGCAATGTTAAAAACTGCAATTTTCCAAGAGGAAAAAAGGTTTGTTTGTTGGTTGTACACTAAATCCTCACAACTATAGCCTATTTGCTTTGTTTATGAGCAGGCTGGAGCGCGCTCTTATGGAGAGAAAATCTAGATGCTCCAACTTGTGGACAGCTTGTTTCCAAAGCAGCGTACATTTCATAAAGTTTTGTTTTGCGGCTTTTTGCTCCAATTGTGTAAATGAACATAGATGTTTATGAGGCGGATCCAGGACAGAGGCAATCAGCATCAGCACGGATTTGGCATCAACTCGTCTGTGTCAAACTGTGACCAGCAATATTCTTCTTTCATTTTGCTTCATTGGCAAAATAAAATGTCTGTAGGCACTTGTGGTTGCACGTGTTACAGTACCGCCAGTTAACAAATATGTGTTTCACATTTATACAGCCAATAAAAAAAAAAAATAAAAAAAAAAAATATTTTTAATCGCTTAGCTGATACCAGTAATTGGTTAAAAACGCACCTTTTCGGATAATGGTAAATCAGTTATTATGAGCATCCCTAGTTTAAATTGGAAAAAAAAAGTACATTATTAAAAAGTAATAAAATACATTTAAAAATAAACCATAACAATATCCTAGTACAGTTTTTTAAATATCTTTTTTTTTAACTGTATTAGCTTGAGAGAACGTCTTTTTCCTTCAGATGTGCCTTTGAAAACAGCCCTTTCTCAAAACGTCAACAAAACAAACTCTACCAGGCCTCATTTATAAGTACAGAGTTTGAGGATCAAATTAGAAAATGTCCATGGAGAGCGAATGAGAGCCATAGGCTGACTTCATAATGACTGGTTACAAATGTATGTAGGTTTGTGCTGAAGGAAAGACTGGAATTACTGATGACTTATTTCAGTCTGTTCAGAATCAGTTCTTTCCTTCAGGAGAAGAGAATTCCGTTTCTGACATACTTTGATCTATATGGAAGATCACAAACCTTTTATGTTCACAAACATCTACATTACAAAGCATAAAAACACCATAACAGGGGAATTTAAGTTGTATATACATACATAAAGTCCATGTTACTTTAGATGATGCATATCAATTATGTCTAATTTTGCAGTACTTTCCAAAGATTACAAACTCTGTGGCTCTGAAACGCATTCAAACACCACTCTCTGTTTGTTTGAGAATCTTGACCAATCTGACACGGCAGCATTGACTCAACCAATTGCGGGATTTCTGTCAGCTTTGCCAAGACCACCCTCTGTATTTTCAAGGGAGTGTTTGCTTATTCACTTTAAAGGTCATAATTTTTTTCTTCCCTGCATCTCTCCCTTATTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTGTATCTCTCTCTCTTTCTTTCATATACTGCTGGTTTAG
Seq C2 exon
AGCCACCAGGCCCCATTGACAACAGCAAGATTGCAGTAATGAAAGGCGGTCATATCCAGCTTAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027501:ENSDART00000006021:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF052806=FlhC=PD(49.2=88.6),PF063377=DUSP=PU(29.9=65.7)
A:
NA
C2:
PF063377=DUSP=FE(29.9=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]