RnoINT0161429 @ rn6
Intron Retention
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9852534-9853301:+
Coord C1 exon
chr3:9852534-9852636
Coord A exon
chr3:9852637-9853229
Coord C2 exon
chr3:9853230-9853301
Length
593 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CACCATGCCGTCCATTCCAGAGC
3' ss Score
7.66
Exon sequences
Seq C1 exon
CTGAACAAGGCATTCCAAGCCGAGGAGTCTCCCGGGGTCATCTACTGCATCAGCATGCACTGGTTCCGAGAGTGGGAGGCTTTCGTCAAGGGGAAGGACAGCG
Seq A exon
GTGAGTAGGCGCAGCCCGTCTGGGGTAGGACCTGCCTGGCGAGTCTTCAGTGCTCTGTTCCAGGGATGCAGAGAGCTTGGATCCCCCAGGCTGGCTCCACTGTTCTCCCCCCACTGTGGCAGAGCACCGTTCCTACCCTGCATCCATGTCTACTCCTGCTGACCCCTGGGGGGAACCTTGGGGTATGATTACCTCCTTGGCGGATAGCTCTAGACCTTCAGGAGGGTGGGAGGACGGGTTTTTGAACCCTTGCATTTGCAATAAGTGACCTATCAGGATTCCCCAAAGTCACCAGGACAGAGTAGCAGACCTGGACTGGGCACCCCATAGCCAGGTTCTTGGGGCCTTGGCATCTACCACTAATGCCCATCACCAAAACACTGCTCTAAAACGAACTCATGTGCCCTAGGTGTCCCTTTTTCTGGGTCCAGAGTCCTGGGAGGTTGGGTAGAATCAAGAGGAAGGCTTTGGTGCACCAAGTAGCCTCTGTTAGCCATGGCTCTGACCTGAGGCCAGACTGGCCCCTGTGGGCCCTGAGTAATAAGCCTTGGGGAAGGATAGAACTGCCTATAACACCATGCCGTCCATTCCAG
Seq C2 exon
AGCCTCCAGGGCCCATCGACAACAGCAGGATTGCACAGGTCAAAGGCAGTGGTCATATCCAGCTAAAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710:ENSRNOT00000010786:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.320
Domain overlap (PFAM):
C1:
PF063377=DUSP=PU(29.9=65.7)
A:
NA
C2:
PF063377=DUSP=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]