DreINT0172701 @ danRer10
Intron Retention
Gene
ENSDARG00000016163 | usp33
Description
ubiquitin specific peptidase 33 [Source:ZFIN;Acc:ZDB-GENE-040426-2323]
Coordinates
chr2:8924046-8927696:+
Coord C1 exon
chr2:8924046-8924136
Coord A exon
chr2:8924137-8927642
Coord C2 exon
chr2:8927643-8927696
Length
3506 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
ATAAATGTGTTTGTTTTTAGGGT
3' ss Score
10.09
Exon sequences
Seq C1 exon
AAGAGCGATGTCTGGAGTGTCCAGCAATGACTGTCCACACTTGGAGTGTGTGGGGGAGATCACCAAAGAAGAACTCATCCAGAAGTCTCAT
Seq A exon
GTGAGTGAGTTCCTACAAAGACTTGCTCACAGTATTGTGAGCTTCAATACTTTTGTTCATTTCCCTCAGTTCAAAAGCTATGCATGATGTATACCACATTTCAAAGTTTTTGAAGTTCGTAATATCTTTGTAATATCGTGCGGCTGCGATATGTATTCCAACATGAATATTATATCACTTTATGATTTGAATAGCTCTATTTGGAATTTTTTTTATTCTTTTAGATCGACTAGGGTGATCAAGTCTTTTCTATGCCTTACATCGGCATAAAATCTAATAAATTAAGCATATATGAATGCAACAGAGGACAAATAAAGGTTAAATAAACAGTGCGTTATGGTTATCTGGCCTAACAGTATTCTAATATTAAAATTGAACAATCAAACATCAACATTGTATTAGAACTGCAAGATTCTGGCTAAAATGAGAATCGCAATTTTTTTTTTTTTTTGCTTAAAATAAAGATCACAATTTTTTCACTATTTCTGTATATGTAAAATAAAGGTATGGTAAAAACAAACATGGCACAACATCGATAATAATATTGTGTAGGTCTACTGGTTTTTGTAAATAATTCTATTCTACTTATAATAATTATGATGTTGAATTATTATGTTTGAGATATATGCTTGCAATCTGTCATATTAGACAAATTTATTCACTGGTAAAATCAGACATTTGCCATTATCAGATTATATTCAACAATATATAGGCTAAAGTAGTTTTATTGACATTGTAAACGTTTATTTTCGTGCACAACTGTGGGTTCCCTATAAAAGAAAAAACATTTCAAATGCTTGCTGTAATCATAACTTTAAAGTGCGATACGATCATTTAAATGAAGTGCACACTTTGGGTTTCGTTTTGACTGCTAAGTGCTTGTTCATACTTCGCGCGTGGCTCCCAAACGATCACTCTGTGCCACAAACTGAATATTATTTACAACTGTATTACCTGTTACTGGCAACGTATGCAGGTTCTGTTCACTAAAGCAGACGCGCGCGCGTTTATCATTAAGTAGAGCGCATGCGCCCTCTCTGTGATAACAGTTTACGGTCAACAGCTCACGTCATATCATTATATGATGACAAAAATGACATTTTTAGGTGAATTATACCTAATAAATACATTATGTGACTCATTCAACATCATTTGGAGGTTTCAGTGTCACTGAGAAACGTATGTGAAACAATGAAAAGACTCGTGCAGCCGCCTTTTCTTCTCTCCTGAACTTAAAAATATGATTGGCAGAATCGTAGAAATACTGGATTAAGATTGTCTAGGGGGTCGAATCGAGATCGCAATCTTTTAAAGATTAATTGTGCAGCTCTACATTGTATGCAAAATTTTCCATTGTAAATAATCTAATCCTGCGATGTGACTATTGCAGATACTCGCATTACGATATCGACGGTCAAATTATATATTATTCCGGCCCTACCATAGACCTGGATCTTTTTGTTGGTTTGAAATCTAAGGGTGCTTTCACACCTGTGAATCGATTCAGTTGTTCCGAAACGGGGATTAAAATTGTTACAATGTTGCTTTTTGTTCTTGGTGCGGTTCGCTTTCACACGGCAAAGTTTCTAAACTGACCAAAAGAGCTAAAACAAGTCACATGCGAGTAAACTCTCCTCTCATTGGTCAGTTTCACGGTTTATTTTGCAGAGTCCCGCTCAGCTGTCAGGTGGGTGGTAGTGGTTTGGTGGTGTTTGACAGGGTGCGCGCGACGTGTCTGAAGAGCGAGGACGGATGCGGTGGGGTGGCGTGAGAAAGGTACGCAATGTATTTGAGGACTGGGAGGGAGACGCGAGATTACCGGGAGATTATCATTTGTTTGCGGGCACCCGGGAGTCTCTGTGCATTTGCGGGAGACTAATGAAACTTCCGGGAGACTTGGAATGTCTGGAATGACCTCCCACCCTACTCATAATTCTCTCTTCATAAAGTCGTATGCCTATTACATATCCATAATACACTGATATAACCGGGCTCGGTTTCGTATCGCTTTCTCACTACAATCAATCTGTTCCAGAGTTAGTTTTAATCAAGCCGAGACCACCTCATTCAAAAGATCTCGGAGCGATTGTTTTGGCGGTATCAGAGCGCAATTGGTAGTTTCACATATGTCAAGCAAACCGCGGTAACTGCGCAAACGATGCAGGTTCTGAAACGAAAGTCTAGGTGTGAATAGGGCTGAGACGGTGGCAATTTTTTACTACTGCGGTGGTAAGTCTAAATAATACGTGACAAAAGTATGTGACACTGCGGAGTGGCGCGTTCTTAACTAGTTACCAAATATGTTGCTCCATTTCTTGTCAATGTCTTCCATTTATCACTTTCTCTTTTGTATCTGGCCATTTGTGGAAATACCTCTTCCATACCTGGCTGACTAGCTAGCCTACGTGGCTTTTTTTCCCTCGCCGTCAATCGCCACTGACTTTCATGGTTCGGGACCTGTGGAGCTGTGTATCGATGGATTTTCTCTACAGTGTTTGGACTCTCAGCAGTGAATATTAAAACAAACTTTAACACTTAAAAAAAAGACCTACAAAAAGCTTAGTCCAAATTAATTGGTTCACTTTTCTCGGTCGGCACGAATCCAAAATGTTCCTAGATGTAAGATTTCGTTGTCTAACAAGACTCATGGTTGAACTTAAACTTGCTGAACCGCGCCTAATGTTATATTCTAACAGAAATGTAATACTTGGCAACATAAAGGTAATTTGTGTTTTGAAGTGCGTGACGTCACAGACTACCGCCGGAGGCAATGGACAACCGCGGTGGCAACTGACCACCGTGGTGACGCGGTTGTCACGGTGACCGTCACAGCCCTAGGTGTGAAAGAACCCGAAATGATCACTTCCTACTTGTAGTTTTGTTAACTGGTTTTGTCGCTGATCTATATACAGTTGAAGTCAGAAATTTTTGCCACTTTTATTTTTATTTTAGTTTTTTAATATCTCCCAAAAGATGTTTAACAAAGCAAGGACATTTTTACATTATATCTGATAATATTTTTGTCTTATTTGTTTTGTTTAATCTTGAATAAAAGCAATTTTAATAGTTTAAGGTCAAAATAATTAACAGTTTTAACCTATATTTTTTCTTCTGTAGTCTACAGAACAAACCATCGTTATACAATAACTTAACTAATTACCCTATCCTGCCTAGTTGACTTAATTAGCCTAGTTAAGCCTTTCAATGTTAAACTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATAATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAGATGAGTTATTAAAACTGTTATGTTTAGAAATGTGTTGAAAAAATTGAACAGAGATTGGGGAAAAATAAACAGGGGGGCTAATAATTCTGACTTCAACTGTATATCAGAGTAAAACAAAATACCGCAACATCTGATTTTTTTCCCCAATACCTACTGCACATGGCATATAGACTTGGAAAGGCACTCATGTATAAATGTGTTTGTTTTTAG
Seq C2 exon
GGTCAGTGTCAGGACTGCAAAGTTGGGGGACCAAATCTTTGGGCATGTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016163:ENSDART00000018114:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=PU(29.6=75.0)
A:
NA
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]