HsaINT0178924 @ hg19
Intron Retention
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:20059]
Coordinates
chr1:78207061-78207433:-
Coord C1 exon
chr1:78207302-78207433
Coord A exon
chr1:78207115-78207301
Coord C2 exon
chr1:78207061-78207114
Length
187 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGA
5' ss Score
4.17
3' ss Seq
TTTTTAATTTCTTTTTATAGGGT
3' ss Score
10.88
Exon sequences
Seq C1 exon
GTGTTACCTCATTTTGAAAGTCTTGGGAAACAGGAAAAAATTCCTAACAAAATGTCAGCTTTTCGAAATCATTGTCCACATTTGGATTCAGTTGGTGAAATAACAAAAGAAGATTTGATACAAAAATCCCTT
Seq A exon
GTAAGAAACAGGTTTTTTCTTCCTTGAAAAACTATTCACTTTTCTCTTGAATGTGTAATTTTCATAAATTACTGTAATACTCTATGAGCAGTATTTTAAAAATATGTATGATGTCATTAGTGCATTAGTGAATTGTATGTGTTTGTGTCAATATAACCAATGTTGTCTTTTTAATTTCTTTTTATAG
Seq C2 exon
GGTACTTGTCAGGATTGTAAAGTCCAAGGACCAAATCTTTGGGCATGTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254-USP33:NM_201624:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTACCTCATTTTGAAAGTCTTGG
R:
CTCCAGACATGCCCAAAGATT
Band lengths:
186-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)