MmuINT1034541 @ mm10
Intron Retention
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152357840-152358199:+
Coord C1 exon
chr3:152357840-152357971
Coord A exon
chr3:152357972-152358145
Coord C2 exon
chr3:152358146-152358199
Length
174 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
TCTTGTGTTTATTTTCCCAGGGC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTTTTGCCTGATTTGAAAAGCCTTGAGAAAGAGAAGGAAAACTGTAAGAAAATGACGACTTTTCGAAATCATTGTCCACATTTGGATTCAGTTGGTGAAATAACGAAAGAGGACTTGATACAGAAATCTCTC
Seq A exon
GTAAGTTCTATAGTAGTCACCCCTGAAATTGCTGCGCTCACTTTCCTCTTAAATACACATCTAAGTCAATTAGTAGGGCACTCTGTGTCATGTGTAAAAATGTATGTTGTTACAGGGAATTGTGTGTGTCTGACACACTGACACAGCAAATGTCTCTTGTGTTTATTTTCCCAG
Seq C2 exon
GGCGCTTGTCAGGACTGTAAAGTCAGAGGACCAAACCTGTGGGCGTGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437:ENSMUST00000026507:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTGCCTGATTTGAAAAGCCT
R:
CACGCCCACAGGTTTGGTC
Band lengths:
179-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types