GgaINT0036554 @ galGal4
Intron Retention
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17884771-17885845:+
Coord C1 exon
chr8:17884771-17884909
Coord A exon
chr8:17884910-17885791
Coord C2 exon
chr8:17885792-17885845
Length
882 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TTGTGTGTTTATTGGAACAGGGC
3' ss Score
6.8
Exon sequences
Seq C1 exon
TGCCTTCTTGGTCTCGGAAATCCCAGCTTCTGGATCTTGGCAAACAAAGCATCTGAAAATGTCATCACTCAGCAGCAATTGCCCACACCTGGAATCGGTTGGTGAGATAACAAAAGAGGAATTGATACAGAAGTCTCAT
Seq A exon
GTGAGTTGTAGCACATTCCTTCCTTCCTATCTCAGTTAAATGTCCTTATCAATTTAGTTGCGCAGCTCATCATGTATTTAGAGTATATTTCCCATCAGTGTTTTTGAAAGCAAGTGATGTTTTAATGGAAATATCACTTAAAAGAGAGAAGCAGAACTTCGTCAGATGCTGCTATTGTGGCAATTAGTTACTTAGATTGTGGAAGTGTAACTATAGAATAGGTAGTATAACTGATGTTTCGAGTGGAAACTGTAACAGAGAAATATCTACTTAAATCTTTGTTGGATCACAGTTTACTTTCTGATAGAGGAGCCACAGGTTGAAAACCTGTCTGAACTCTTGGTTTCTAGCTAGTTTTAATAAAGAGAAGAAAGGACTTTGTAACTCATTTTAATAACTGGGAAGTGATCAAAAGTCAACCCTTTTTTGTCCATGGTACTGTATTTCTTTGTAGAAGTGGAGCAGTTGTTTGCTGCTGAGGGGAATACTTTTGCAGGGAGTGTTGAATGTATGGAAATAGGGATGTGCAGGTGTTGTAAGTTCCACTTTCATTTCTCTTGATGTTAAATTGATGAGCAAGACCGATTTTGATGATAATGTAATATGAAATATATTTATGCTTTATTTAGAGGAACGTTTCTTCAGATGAAATCTCAGAGCTGTAAGACTTTACTACAGATACACGAAGCTTAAAATTGGGTTAAGATAAACAAAAATTGAGCTAGTATCAGCATTCTTTTTTTCTGTCTTAAAAATTAGTTGATGGTTGAAATTCAGTTGATAGTTGGTCTTACAGTATTTTTTCTCAGTTTGTCTTGAGGTTGTGGTTTACTGATGATAGTAAATTAAAATCATTCTTTGCTTGTGTGTTTATTGGAACAG
Seq C2 exon
GGCAGTTGTCAGGACTGTAAAGTCAGAGGACCCAACCTTTGGGCATGCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0214814=zf-UBP=PU(22.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTTGGTCTCGGAAATCC
R:
CTCCAAGCATGCCCAAAGGTT
Band lengths:
192-1074
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]